Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g018000.3 Solanum lycopersicum HOM05D004601 ORTHO05D005806 0.0e+00 1132.9 575 100.0
Sopen07g006920 Solanum pennellii HOM05D004601 ORTHO05D005806 0.0e+00 1082.8 567 97.2
Nitab4.5_0000056g0060 Nicotiana tabacum HOM05D004601 ORTHO05D005806 1.4e-235 819.7 563 76.4
CAN.G285.4 Capsicum annuum HOM05D004601 ORTHO05D005806 1.5e-224 783.1 490 82.9
Peaxi162Scf00231g01115 Petunia axillaris HOM05D004601 ORTHO05D005806 3.3e-216 755.4 566 72.1
Dinv25455 Davidia involucrata HOM05D004601 ORTHO05D005806 4.2e-155 552.4 601 52.2
Actinidia02499 Actinidia chinensis HOM05D004601 ORTHO05D005806 1.1e-152 544.3 580 51.7
Cc06_g20790 Coffea canephora HOM05D004601 ORTHO05D005806 2.9e-148 529.6 572 51.2
CSS0021444 Camellia sinensis var. sinensis HOM05D004601 ORTHO05D005806 3.5e-141 506.1 577 49.2
Prupe.1G074600 Prunus persica HOM05D004601 ORTHO05D005806 1.1e-136 491.1 581 46.0
GSVIVG01029314001 Vitis vinifera HOM05D004601 ORTHO05D005806 3.3e-136 489.6 577 47.0
TWI63G1718 Tripterygium wilfordii HOM05D004601 ORTHO05D005806 1.6e-133 480.7 580 46.9
Cfa013456 Carpinus fangiana HOM05D004601 ORTHO05D005806 4.5e-133 479.2 580 47.4
Migut.J00793 Erythranthe guttata HOM05D004601 ORTHO05D005806 1.0e-132 478.0 619 44.1
MSTRG.5939 Avicennia marina HOM05D004601 ORTHO05D005806 1.7e-132 477.2 640 43.6
CiPaw.08G032200 Carya illinoinensis HOM05D004601 ORTHO05D005806 6.5e-132 475.3 577 48.0
Ciclev10007283m.g Citrus clementina HOM05D004601 ORTHO05D005806 1.9e-131 473.8 577 47.1
MD16G1247900 Malus domestica HOM05D004601 ORTHO05D005806 4.7e-130 469.2 576 46.0
ECA236G0938 Erigeron canadensis HOM05D004601 ORTHO05D005806 7.5e-128 461.8 569 46.9
Gohir.A13G208300 Gossypium hirsutum HOM05D004601 ORTHO05D005806 2.0e-125 453.8 600 43.7
Gorai.013G243100 Gossypium raimondii HOM05D004601 ORTHO05D005806 4.5e-125 452.6 600 43.5
Duzib150G1331 Durio zibethinus HOM05D004601 ORTHO05D005806 5.0e-124 449.1 619 43.0
FvH4_4g07160 Fragaria vesca HOM05D004601 ORTHO05D005806 8.5e-124 448.4 604 43.5
Thecc.09G186600 Theobroma cacao HOM05D004601 ORTHO05D005806 1.9e-123 447.2 612 42.5
HanXRQChr05g0141031 Helianthus annuus HOM05D004601 ORTHO05D005806 2.7e-122 443.4 574 46.3
FAN17G2239 Fragaria x ananassa HOM05D004601 ORTHO05D005806 8.0e-122 441.8 606 44.2
Nn8g40736 Nelumbo nucifera HOM05D004601 ORTHO05D005806 8.8e-121 438.3 586 44.4
RcHm_v2.0_Chr4g0399311 Rosa chinensis HOM05D004601 ORTHO05D005806 9.8e-120 434.9 597 42.9
Glyma.15G166700 Glycine max HOM05D004601 ORTHO05D005806 1.8e-118 430.6 582 43.6
Potri.018G141900 Populus trichocarpa HOM05D004601 ORTHO05D005806 5.4e-118 429.1 456 49.8
Ca_02111_v3 Cicer arietinum L. HOM05D004601 ORTHO05D005806 1.6e-117 427.6 588 43.7
Sabra18G0116000 Salix brachista HOM05D004601 ORTHO05D005806 5.0e-116 422.5 466 48.3
Phvul.009G235800 Phaseolus vulgaris HOM05D004601 ORTHO05D005806 3.3e-115 419.9 590 43.2
PSO170G3696 Papaver somniferum HOM05D004601 ORTHO05D005806 6.1e-114 415.6 643 40.9
Rhsim03G0267200 Rhododendron simsii HOM05D004601 ORTHO05D005806 6.1e-114 415.6 580 44.7
Lalb_Chr08g0231931 Lupinus albus HOM05D004601 ORTHO05D005806 1.2e-112 411.4 593 42.2
VMungo1309G1314 Vigna mungo HOM05D004601 ORTHO05D005806 1.5e-112 411.0 599 41.1
Psat1g144400 Pisum sativum HOM05D004601 ORTHO05D005806 4.4e-112 409.5 589 42.8
TPR.G7576 Trifolium pratense HOM05D004601 ORTHO05D000001 4.4e-112 409.5 596 42.1
Lj6g0004756 Lotus japonicus HOM05D004601 ORTHO05D005806 7.5e-112 408.7 582 42.1
SalBow6G1386 Salvia bowleyana HOM05D004601 ORTHO05D005806 9.8e-112 408.3 599 42.1
vmacro05994 Vaccinium macrocarpon HOM05D004601 ORTHO05D005806 1.3e-111 407.9 578 44.3
arahy.Tifrunner.gnm1.ann1.BQ8TF8 Arachis hypogaea HOM05D004601 ORTHO05D005806 4.9e-111 406.0 595 42.5
PGR142G4125 Punica granatum HOM05D004601 ORTHO05D005806 8.3e-111 405.2 598 41.5
Sc16g0011160 Simmondsia chinensis HOM05D004601 ORTHO05D005806 1.1e-110 404.8 584 42.6
EL10Ac4g10170 Beta vulgaris HOM05D004601 ORTHO05D005806 1.4e-110 404.4 611 40.9
PSO063G2966 Papaver somniferum HOM05D004601 ORTHO05D005806 1.4e-110 404.4 644 40.7
Aqoxy7G02847 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 1.8e-110 404.1 627 41.5
PGR142G2375 Punica granatum HOM05D004601 ORTHO05D005806 4.1e-110 402.9 598 41.3
Sed0026596 Sechium edule HOM05D004601 ORTHO05D005806 7.8e-109 398.7 638 39.8
Lsat_1_v5_gn_8_69120 Lactuca sativa HOM05D004601 ORTHO05D005806 2.3e-108 397.1 573 43.3
FAN22G2150 Fragaria x ananassa HOM05D004601 ORTHO05D005806 2.1e-106 390.6 469 45.2
MELO3C003972.2 Cucumis melo HOM05D004601 ORTHO05D005806 6.2e-106 389.0 635 38.7
Cpa.g.sc95.10 Carica papaya HOM05D004601 ORTHO05D005806 1.8e-105 387.5 571 41.5
CsaV3_2G008760 Cucumis sativus L. HOM05D004601 ORTHO05D005806 4.0e-105 386.3 637 39.7
THA.LOC104817773 Tarenaya hassleriana HOM05D004601 ORTHO05D005806 1.2e-104 384.8 618 40.9
AUR62039835 Chenopodium quinoa HOM05D004601 ORTHO05D005806 2.0e-104 384.0 634 39.4
Carub.0008s1767 Capsella rubella HOM05D004601 ORTHO05D005806 4.4e-104 382.9 649 37.8
CARHR270950 Cardamine hirsuta HOM05D004601 ORTHO05D005806 7.5e-104 382.1 642 37.7
FAN12G1367 Fragaria x ananassa HOM05D004601 ORTHO05D005806 9.8e-104 381.7 604 40.9
AL8G33090 Arabidopsis lyrata HOM05D004601 ORTHO05D005806 3.7e-103 379.8 637 39.1
Eucgr.C00108 Eucalyptus grandis HOM05D004601 ORTHO05D005806 3.7e-103 379.8 585 41.2
Sp6g18890 Schrenkiella parvula HOM05D004601 ORTHO05D005806 2.4e-102 377.1 647 37.9
AUR62000175 Chenopodium quinoa HOM05D004601 ORTHO05D005806 3.2e-102 376.7 627 39.2
Gohir.D13G212700 Gossypium hirsutum HOM05D004601 ORTHO05D005806 5.4e-102 375.9 365 51.2
Thhalv10012474m.g Eutrema salsugineum HOM05D004601 ORTHO05D005806 1.6e-101 374.4 648 38.6
BolC9t57749H Brassica oleracea HOM05D004601 ORTHO05D005806 4.6e-101 372.9 629 37.8
BraA10t43541Z Brassica rapa HOM05D004601 ORTHO05D005806 1.7e-100 370.9 623 38.5
BcaC04g19998 Brassica carinata HOM05D004601 ORTHO05D005806 3.9e-100 369.8 635 37.2
AT5G57160 Arabidopsis thaliana HOM05D004601 ORTHO05D005806 1.6e-98 364.4 646 37.3
BcaC04g19995 Brassica carinata HOM05D004601 ORTHO05D005806 1.6e-98 364.4 629 38.0
C09p48970 Brassica napus HOM05D004601 ORTHO05D005806 3.6e-98 363.2 629 37.8
Hma1.2p1_0235F.1_g098690 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 8.9e-97 358.6 440 45.9
Ah.06g194430 Amaranthus hybridus HOM05D004601 ORTHO05D005806 1.5e-96 357.8 609 38.4
A10p14520 Brassica napus HOM05D004601 ORTHO05D005806 2.6e-96 357.1 622 37.1
CDE07G0894 Ceratophyllum demersum HOM05D004601 ORTHO05D005806 3.7e-95 353.2 585 37.9
SGA_v2.0_scaffold112G31593 Striga asiatica HOM05D004601 ORTHO05D005806 3.7e-95 353.2 556 39.7
Nitab4.5_0006199g0020 Nicotiana tabacum HOM05D004601 ORTHO05D005806 1.9e-94 350.9 307 65.1
CANSAT11G0507 Cannabis sativa HOM05D004601 ORTHO05D005806 4.6e-93 346.3 642 36.1
Glyma.09G060132 Glycine max HOM05D004601 ORTHO05D005806 7.3e-91 339.0 321 51.4
arahy.Tifrunner.gnm1.ann1.LL4FRQ Arachis hypogaea HOM05D004601 ORTHO05D005806 4.0e-89 333.2 550 40.4
HPP92_021964 Vanilla planifolia HOM05D004601 ORTHO05D005806 4.0e-89 333.2 580 37.1
Manes.14G159112 Manihot esculenta HOM05D004601 ORTHO05D005806 1.5e-88 331.3 278 55.0
Aa31LG3G13060 Aethionema arabicum HOM05D004601 ORTHO05D005806 1.4e-86 324.7 659 35.2
MBI16_g47869_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 7.8e-85 318.9 299 53.2
Zm00001eb071490 Zea mays HOM05D004601 ORTHO05D005806 1.7e-84 317.8 645 35.3
Medtr2g038030 Medicago truncatula HOM05D004601 ORTHO05D005806 1.1e-83 315.1 276 54.3
ClCG11G011720 Citrullus lanatus HOM05D004601 ORTHO05D005806 1.9e-83 314.3 647 34.9
COL.COLO4_06398 Corchorus olitorius HOM05D004601 ORTHO05D005806 2.5e-83 313.9 506 40.1
Aqoxy295s002 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 8.4e-79 298.9 317 48.9
Atru.chr7.956 Acer truncatum HOM05D004601 ORTHO05D005806 1.1e-67 261.9 396 41.7
ECA236G2032 Erigeron canadensis HOM05D004601 ORTHO05D005806 5.5e-62 243.0 425 37.9
SHI03064 Sapria himalayana HOM05D004601 ORTHO05D005806 4.6e-61 240.0 275 46.9
Hma1.2p1_0235F.1_g098680 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 1.3e-60 238.4 180 63.9
TAR383G0412 Trochodendron aralioides HOM05D004601 ORTHO05D005806 6.2e-58 229.6 180 61.7
MBI16_g10345_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 3.4e-56 223.8 565 30.4
DCAR_020147 Daucus carota HOM05D004601 ORTHO05D005806 2.9e-55 220.7 291 40.9
Pp3c14_5920 Physcomitrium patens HOM05D004601 ORTHO05D005806 4.9e-55 219.9 339 36.3
ATR0626G236 Amborella trichopoda HOM05D004601 ORTHO05D005806 3.9e-52 210.3 420 34.5
Mapoly0001s0137 Marchantia polymorpha HOM05D004601 ORTHO05D005806 1.5e-51 208.4 515 29.5
Lj7A622G14 Lonicera japonica HOM05D004601 ORTHO05D005806 6.3e-50 203.0 280 43.6
Psat5g051520 Pisum sativum HOM05D004601 ORTHO05D005806 2.0e-48 198.0 159 61.0
SEGI_28566 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 1.9e-46 191.4 180 52.8
AagrBONN_evm.TU.Sc2ySwM_228.1820 Anthoceros agrestis HOM05D004601 ORTHO05D005806 1.1e-43 182.2 240 40.4
BcaB08g35989 Brassica carinata HOM05D004601 ORTHO05D005806 3.7e-42 177.2 259 41.3
SMO144G0133 Selaginella moellendorffii HOM05D004601 ORTHO05D005806 3.3e-35 154.1 357 31.4
CAN.G285.5 Capsicum annuum HOM05D004601 ORTHO05D005806 8.5e-23 112.8 60 86.7
AagrBONN_evm.TU.Sc2ySwM_228.3225 Anthoceros agrestis HOM05D004601 ORTHO05D005806 7.2e-22 109.8 294 26.2
Rhsim01G0115200 Rhododendron simsii HOM05D004601 ORTHO05D005806 3.6e-21 107.5 274 32.8
RhsimUnG0137600 Rhododendron simsii HOM05D004601 ORTHO05D005806 4.0e-20 104.0 135 48.1
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 6.7e-20 103.2 171 39.2
SalBow7G2616 Salvia bowleyana HOM05D005568 ORTHO05D006940 1.4e-17 95.5 64 65.6
Oeu019558.1 Olea europaea HOM05D004601 ORTHO05D005806 4.4e-11 73.9 70 57.1
CBR_g50206 Chara braunii HOM05D000019 ORTHO05D000048 9.8e-11 72.8 424 24.1
arahy.Tifrunner.gnm1.ann1.8TE3EA Arachis hypogaea HOM05D004601 ORTHO05D005806 1.6e-08 65.5 70 51.4
Aqoxy295s001 Aquilegia oxysepala HOM05D004601 ORTHO05D038506 1.1e-06 59.3 112 38.4
Lj7A622G13 Lonicera japonica HOM05D004601 ORTHO05D005806 9.5e-06 56.2 54 50.0


User provided reference genes

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