Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 9.9e-255 882.9 419 100.0
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 2.1e-249 865.1 419 98.6
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 7.9e-228 793.5 415 90.1
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 2.2e-217 758.8 410 87.1
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.2e-207 726.5 363 95.0
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 1.3e-193 679.9 346 91.6
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 5.2e-187 657.9 413 75.1
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 1.3e-182 643.3 411 71.8
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 6.1e-180 634.4 416 71.9
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 1.8e-179 632.9 416 71.9
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 3.0e-179 632.1 462 66.2
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.5e-178 629.8 415 71.1
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 4.4e-178 628.2 391 73.7
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 5.7e-178 627.9 413 70.7
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 9.8e-178 627.1 410 70.7
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 6.3e-177 624.4 413 70.5
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 6.3e-177 624.4 403 71.2
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 2.7e-175 619.0 415 70.4
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 3.5e-175 618.6 375 75.2
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 5.9e-175 617.8 416 69.7
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 1.0e-174 617.1 409 68.9
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 1.3e-174 616.7 462 65.6
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.3e-174 615.9 410 69.3
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 8.6e-174 614.0 417 69.1
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 3.3e-173 612.1 414 68.8
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.3e-173 612.1 415 69.4
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 1.2e-172 610.1 415 69.2
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 4.7e-172 608.2 411 68.4
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 6.1e-172 607.8 409 69.2
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 6.1e-172 607.8 411 68.1
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 2.3e-171 605.9 401 69.1
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.0e-171 605.1 408 70.1
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 2.0e-170 602.8 406 69.7
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 4.4e-170 601.7 406 68.7
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 4.4e-170 601.7 416 68.3
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 7.5e-170 600.9 406 69.0
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 8.3e-169 597.4 411 68.1
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 1.8e-168 596.3 411 68.9
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 3.2e-168 595.5 417 66.2
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 4.1e-168 595.1 370 73.0
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 5.4e-168 594.7 360 74.2
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 5.4e-168 594.7 419 67.3
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.2e-167 593.6 401 67.8
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.3e-166 590.1 402 67.7
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 3.9e-166 588.6 373 71.0
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 8.6e-166 587.4 414 66.4
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.5e-165 586.6 413 68.3
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 1.5e-165 586.6 411 66.2
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 5.6e-165 584.7 406 68.0
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 7.3e-165 584.3 418 65.6
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 9.5e-165 583.9 412 66.0
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.8e-164 582.4 421 66.3
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 6.2e-164 581.3 386 71.0
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-163 578.2 408 64.7
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 6.8e-163 577.8 406 67.5
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 1.2e-162 577.0 413 63.7
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 1.2e-162 577.0 406 67.5
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 9.8e-162 573.9 405 66.2
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 2.2e-161 572.8 409 66.5
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 3.7e-161 572.0 419 64.7
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 1.4e-160 570.1 409 64.3
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 1.2e-159 567.0 375 70.4
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 1.6e-159 566.6 411 64.0
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 2.7e-159 565.8 410 65.1
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 4.6e-159 565.1 407 66.8
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.9e-157 559.7 411 63.7
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 1.9e-157 559.7 401 64.8
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 3.3e-157 558.9 417 62.8
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 5.6e-157 558.1 384 67.7
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 1.2e-156 557.0 412 63.6
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 2.1e-156 556.2 402 65.7
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 1.4e-155 553.5 411 63.5
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 2.3e-155 552.7 410 63.2
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 3.1e-155 552.4 409 65.3
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 5.2e-155 551.6 410 62.9
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 2.6e-154 549.3 410 62.4
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.6e-154 549.3 370 70.3
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 3.4e-154 548.9 373 69.2
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 4.4e-154 548.5 407 63.9
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 4.4e-154 548.5 370 70.3
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 5.8e-154 548.1 408 62.5
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 2.9e-153 545.8 408 63.0
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 8.3e-153 544.3 436 59.9
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.9e-152 543.1 423 61.7
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 5.4e-152 541.6 416 62.3
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 2.1e-151 539.7 415 62.7
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 5.1e-150 535.0 343 70.0
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.8e-147 526.6 374 67.1
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 6.4e-145 518.1 375 64.0
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.1e-140 503.1 367 67.0
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 2.8e-140 502.7 416 59.9
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 6.2e-140 501.5 299 73.9
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 1.2e-138 497.3 347 67.4
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 8.4e-137 491.1 411 58.4
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 1.1e-136 490.7 419 57.3
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 4.2e-136 488.8 379 60.7
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 7.1e-136 488.0 441 56.9
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 5.6e-133 478.4 409 58.2
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 7.6e-130 468.0 422 55.0
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 2.4e-128 463.0 375 58.9
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 5.4e-128 461.8 375 58.4
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.9e-125 453.4 351 61.8
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 5.6e-125 451.8 307 69.1
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-124 450.7 415 55.2
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 6.2e-124 448.4 351 61.5
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 1.1e-123 447.6 407 53.6
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.9e-122 441.0 362 58.8
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 2.4e-120 436.4 320 65.6
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.6e-119 433.7 392 56.1
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 3.9e-118 429.1 319 64.9
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.3e-117 426.0 413 52.5
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 4.2e-112 409.1 356 57.6
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 5.1e-110 402.1 199 93.5
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-108 397.5 247 71.7
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 6.3e-108 395.2 436 47.5
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 2.6e-106 389.8 268 68.3
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 1.7e-105 387.1 274 68.2
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 9.3e-104 381.3 283 58.3
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.6e-103 379.4 418 49.5
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 4.5e-98 362.5 200 80.5
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 4.2e-96 355.9 411 45.3
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 7.4e-93 345.1 261 62.5
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.2e-88 329.7 272 57.7
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 7.2e-88 328.6 345 50.4
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-79 299.3 202 67.8
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.8e-78 295.0 202 66.3
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-75 287.0 200 66.0
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 4.1e-75 286.2 409 40.8
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 8.5e-73 278.5 167 72.5
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.8e-70 270.8 296 42.6
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 7.0e-67 258.8 165 70.9
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-55 221.1 194 57.2
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.8e-53 212.6 144 66.7
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.8e-53 212.6 144 66.7
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.8e-53 212.6 144 66.7
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 6.4e-52 209.1 144 66.0
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 1.9e-51 207.6 255 45.5
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.6e-49 198.7 154 61.0
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 1.5e-45 188.0 115 71.3
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.9e-44 183.0 187 50.3
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 5.4e-43 179.5 86 96.5
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.0e-41 173.7 96 77.1
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 1.3e-36 158.3 108 67.6
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.5e-32 144.8 100 65.0
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 2.2e-28 131.0 84 67.9
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.8e-22 111.3 79 62.0
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-21 108.6 66 71.2
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 5.6e-16 89.7 255 28.2
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 2.0e-13 81.3 43 79.1
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 4.9e-12 76.6 44 77.3
Dinv44900 Davidia involucrata HOM05D004741 ORTHO05D005454 7.1e-11 72.8 70 54.3
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.5e-10 70.5 89 38.2
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 1.8e-09 68.2 262 26.0
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.1e-08 65.5 113 38.1
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 1.6e-07 61.6 263 23.2
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 2.1e-07 61.2 36 77.8
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 1.8e-06 58.2 59 50.8


User provided reference genes

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