Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g017250.4 Solanum lycopersicum HOM05D006401 ORTHO05D007864 1.7e-111 406.0 197 100.0
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 3.5e-85 318.5 163 96.3
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 5.4e-70 268.1 176 73.9
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 1.3e-66 256.9 163 75.5
CAN.G146.3 Capsicum annuum HOM05D006401 ORTHO05D007864 1.3e-63 246.9 139 87.8
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 1.5e-48 196.8 166 56.0
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 2.7e-45 186.0 166 54.8
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 4.3e-43 178.7 171 54.4
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 7.4e-43 177.9 170 57.1
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 1.3e-42 177.2 166 54.2
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 1.6e-42 176.8 164 54.3
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 1.6e-42 176.8 177 53.1
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 2.8e-42 176.0 161 56.5
Lju50A23T26 Lonicera japonica HOM05D006401 ORTHO05D007864 2.8e-42 176.0 174 53.4
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 3.7e-42 175.6 169 53.8
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 3.7e-42 175.6 165 55.8
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 3.7e-42 175.6 180 52.2
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 4.8e-42 175.3 178 52.2
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 1.4e-41 173.7 177 50.8
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 1.8e-41 173.3 183 49.2
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 1.8e-41 173.3 166 55.4
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 1.8e-41 173.3 171 50.9
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 2.4e-41 172.9 170 50.6
ClCG06G014090 Citrullus lanatus HOM05D006401 ORTHO05D007864 3.1e-41 172.6 171 52.0
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 3.1e-41 172.6 165 54.5
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 4.0e-41 172.2 168 51.2
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 6.9e-41 171.4 165 52.7
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 6.9e-41 171.4 167 53.9
Gohir.D04G087600 Gossypium hirsutum HOM05D006401 ORTHO05D007864 9.0e-41 171.0 167 54.5
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 1.2e-40 170.6 163 50.9
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 1.2e-40 170.6 169 53.3
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.2e-40 170.6 169 53.3
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.2e-40 170.6 168 53.0
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 2.0e-40 169.9 173 53.2
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 5.8e-40 168.3 176 51.1
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 5.8e-40 168.3 176 51.1
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 5.8e-40 168.3 166 52.4
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 5.8e-40 168.3 189 48.7
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 7.6e-40 167.9 158 54.4
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 7.6e-40 167.9 162 55.6
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 1.0e-39 167.5 172 53.5
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 1.3e-39 167.2 169 53.8
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 1.3e-39 167.2 169 53.8
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 1.3e-39 167.2 159 55.3
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 1.3e-39 167.2 170 51.8
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 2.2e-39 166.4 166 51.2
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 2.9e-39 166.0 168 53.0
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 2.9e-39 166.0 157 52.9
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 3.8e-39 165.6 161 54.0
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 3.8e-39 165.6 193 48.2
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 6.5e-39 164.9 168 52.4
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 6.5e-39 164.9 170 48.8
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 8.4e-39 164.5 162 48.1
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 1.1e-38 164.1 167 51.5
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 1.9e-38 163.3 158 53.2
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 1.9e-38 163.3 168 50.6
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 2.5e-38 162.9 174 49.4
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 2.5e-38 162.9 177 49.7
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 2.5e-38 162.9 162 52.5
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 2.5e-38 162.9 190 45.3
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 3.2e-38 162.5 166 53.6
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 3.2e-38 162.5 167 51.5
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 3.2e-38 162.5 177 49.2
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 3.2e-38 162.5 159 52.2
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 3.2e-38 162.5 179 49.2
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 4.2e-38 162.2 167 53.9
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 5.5e-38 161.8 176 49.4
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 5.5e-38 161.8 158 49.4
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 7.1e-38 161.4 162 51.9
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 1.2e-37 160.6 183 47.0
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 1.2e-37 160.6 181 48.1
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.2e-37 160.6 164 53.7
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.2e-37 160.6 164 53.7
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 2.1e-37 159.8 154 57.1
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 2.1e-37 159.8 154 56.5
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 2.7e-37 159.5 171 50.9
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 3.5e-37 159.1 217 42.9
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 4.6e-37 158.7 160 50.6
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 4.6e-37 158.7 166 50.6
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 6.1e-37 158.3 186 47.8
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 1.3e-36 157.1 174 46.6
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 2.3e-36 156.4 182 48.9
Psat7g020960 Pisum sativum HOM05D006401 ORTHO05D007864 6.7e-36 154.8 160 53.1
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 8.7e-36 154.5 180 48.3
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 1.2e-32 144.1 174 47.1
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 1.5e-32 143.7 156 47.4
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 3.4e-32 142.5 147 56.5
Cfa020752 Carpinus fangiana HOM05D006401 ORTHO05D007864 3.8e-31 139.0 161 47.8
SEGI_02756 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 3.2e-30 136.0 160 45.6
DCAR_010674 Daucus carota HOM05D006401 ORTHO05D007864 1.6e-29 133.7 141 51.8
Atru.chr7.892 Acer truncatum HOM05D006401 ORTHO05D007864 7.9e-29 131.3 152 49.3
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 7.9e-29 131.3 155 49.7
Haze_19099 Corylus avellana HOM05D006401 ORTHO05D007864 5.5e-22 108.6 129 50.4
Lj9A5T15 Lonicera japonica HOM05D006401 ORTHO05D007864 9.4e-22 107.8 127 50.4
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 1.1e-19 100.9 87 59.8
SMO232G0120 Selaginella moellendorffii HOM05D006401 ORTHO05D007864 7.4e-19 98.2 165 35.8
CDE05G1402 Ceratophyllum demersum HOM05D000163 ORTHO05D007864 3.7e-18 95.9 121 42.1
CBR_g44387 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-14 82.0 230 26.5
Oeu036951.3 Olea europaea HOM05D006401 ORTHO05D007864 1.0e-12 77.8 165 35.2
SEGI_34102 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 4.4e-11 72.4 77 49.4
SEGI_28851 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 3.1e-09 66.2 49 59.2
SEGI_09852 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.5e-06 57.4 96 37.5


User provided reference genes

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