Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 6.5e-182 640.6 318 100.0
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 1.6e-164 582.8 291 99.3
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 3.6e-164 581.6 291 99.3
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 6.1e-156 554.3 286 95.5
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 4.5e-151 538.1 305 88.9
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 3.8e-142 508.4 287 88.2
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 3.0e-134 482.3 288 81.9
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 1.5e-133 479.9 292 81.5
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 1.1e-131 473.8 285 80.4
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.1e-131 473.8 286 80.8
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 2.0e-130 469.5 285 82.1
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 2.2e-129 466.1 287 80.5
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 4.1e-128 461.8 287 79.4
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 5.4e-128 461.5 288 77.4
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 3.5e-127 458.8 271 81.2
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 4.3e-125 451.8 285 78.9
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 5.6e-125 451.4 292 77.7
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 4.7e-124 448.4 286 77.6
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 5.2e-123 444.9 306 73.2
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 8.9e-123 444.1 273 78.4
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 9.9e-122 440.7 295 75.3
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 4.9e-121 438.3 273 79.1
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 2.3e-118 429.5 295 73.6
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 5.1e-118 428.3 287 75.3
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 8.6e-118 427.6 295 72.9
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.1e-117 427.2 277 75.5
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 7.3e-117 424.5 295 71.2
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 9.5e-117 424.1 294 71.8
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 9.5e-117 424.1 294 72.8
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 3.6e-116 422.2 294 71.8
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 3.6e-116 422.2 295 71.9
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 8.1e-116 421.0 294 71.1
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 8.1e-116 421.0 294 71.8
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 1.4e-115 420.2 301 70.1
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 1.8e-115 419.9 296 70.9
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.8e-115 419.9 296 71.6
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 8.9e-115 417.5 297 70.0
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 1.5e-114 416.8 300 69.3
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 2.6e-114 416.0 294 71.4
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 3.4e-114 415.6 291 71.8
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 4.4e-114 415.2 295 69.8
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 5.8e-114 414.8 299 70.9
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 1.7e-113 413.3 296 69.3
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 1.7e-113 413.3 297 69.4
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 2.9e-113 412.5 294 70.1
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 2.9e-113 412.5 304 69.1
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 3.8e-113 412.1 297 71.7
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 4.9e-113 411.8 299 69.6
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 3.2e-112 409.1 297 69.4
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 9.2e-112 407.5 305 68.2
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 1.2e-111 407.1 299 70.6
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 3.5e-111 405.6 299 69.9
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 7.8e-111 404.4 304 68.1
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 1.0e-110 404.1 295 70.2
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 1.7e-110 403.3 293 68.9
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 3.9e-110 402.1 297 68.4
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 5.1e-110 401.7 294 69.7
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 6.6e-110 401.4 304 68.1
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 8.7e-110 401.0 299 68.2
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 3.3e-109 399.1 297 68.0
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 5.6e-109 398.3 299 66.9
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 9.6e-109 397.5 276 73.2
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 1.1e-107 394.0 284 69.7
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.4e-107 393.7 317 64.7
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 2.4e-107 392.9 301 66.4
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 3.1e-107 392.5 284 69.0
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 9.0e-107 391.0 261 77.0
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 3.4e-106 389.0 274 71.2
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 7.6e-106 387.9 317 64.0
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 2.2e-105 386.3 331 63.1
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 2.2e-105 386.3 295 66.4
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 2.2e-105 386.3 229 86.5
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 3.2e-104 382.5 295 65.4
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 9.3e-104 380.9 298 66.4
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 2.7e-103 379.4 306 65.4
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 3.5e-103 379.0 301 62.8
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 6.0e-103 378.3 294 66.0
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 7.8e-103 377.9 299 65.9
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 7.8e-103 377.9 296 65.9
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 2.3e-102 376.3 234 80.8
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 5.1e-102 375.2 294 66.0
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 1.5e-101 373.6 296 65.9
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 2.5e-101 372.9 290 65.5
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 3.3e-101 372.5 296 66.2
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 7.3e-101 371.3 277 67.9
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 1.6e-100 370.2 251 73.7
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 1.7e-97 360.1 248 73.4
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 3.8e-97 359.0 211 86.7
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.4e-96 357.1 247 72.1
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 1.9e-96 356.7 252 71.8
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 1.9e-96 356.7 294 63.6
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.2e-96 355.9 251 71.3
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 1.6e-95 353.6 297 60.9
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 1.2e-90 337.4 244 70.5
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 1.7e-89 333.6 291 54.6
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 2.9e-89 332.8 208 81.2
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 6.0e-87 325.1 306 54.6
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 9.6e-85 317.8 321 55.8
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 2.1e-84 316.6 199 76.9
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 4.9e-81 305.4 238 65.1
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 8.4e-81 304.7 200 76.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 8.2e-76 288.1 251 61.0
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 1.1e-75 287.7 218 67.4
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 3.1e-75 286.2 221 66.1
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 1.2e-71 274.2 149 84.6
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.3e-68 264.2 229 64.2
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 2.0e-66 256.9 290 50.7
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.6e-66 256.5 384 44.0
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 1.7e-65 253.8 252 56.3
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.1e-64 251.1 310 44.8
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 4.1e-59 232.6 184 64.7
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 6.5e-57 225.3 181 65.2
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 1.9e-48 197.2 178 59.0
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 8.8e-46 188.3 128 70.3
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 1.2e-45 188.0 95 94.7
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 3.3e-45 186.4 111 75.7
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.7e-44 184.1 203 52.2
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 1.0e-41 174.9 120 67.5
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 1.1e-40 171.4 164 56.1
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 9.4e-40 168.3 96 81.2
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 6.1e-39 165.6 292 36.6
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 1.8e-35 154.1 117 70.1
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 2.4e-35 153.7 95 82.1
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 8.6e-33 145.2 153 49.7
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 5.2e-30 136.0 79 77.2
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 1.5e-29 134.4 278 35.6
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 2.7e-26 123.6 158 43.7
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 6.6e-25 119.0 70 82.9
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 4.3e-24 116.3 335 27.8
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 9.5e-24 115.2 135 43.0
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.0e-17 95.1 82 61.0
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.2e-15 88.2 79 63.3
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 2.2e-12 77.4 93 52.7
SalBow3G3353 Salvia bowleyana HOM05D005614 ORTHO05D006759 1.9e-11 74.3 65 61.5
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 7.8e-10 68.9 31 83.9
CAN.G1086.2 Capsicum annuum HOM05D003813 ORTHO05D004557 1.7e-09 67.8 42 81.0
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.3e-09 67.4 99 42.4


User provided reference genes

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