Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.1e-63 246.5 123 100.0
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 1.6e-40 169.5 92 91.3
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.9e-29 132.1 112 62.5
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.9e-29 132.1 112 63.4
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 2.9e-29 132.1 112 63.4
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 4.9e-29 131.3 112 62.5
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 6.5e-29 131.0 112 61.6
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.3e-26 122.5 112 58.0
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 3.0e-26 122.1 112 56.2
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 3.0e-26 122.1 112 58.0
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 3.9e-26 121.7 112 57.1
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 8.7e-26 120.6 104 58.7
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 1.1e-25 120.2 104 58.7
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.1e-25 120.2 112 56.2
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.5e-25 119.8 112 55.4
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.5e-25 119.8 112 57.1
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 1.5e-25 119.8 112 55.4
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 2.5e-25 119.0 104 57.7
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 3.3e-25 118.6 112 52.7
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 5.7e-25 117.9 112 53.6
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 7.4e-25 117.5 112 57.1
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 9.7e-25 117.1 112 55.4
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 9.7e-25 117.1 112 57.1
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 9.7e-25 117.1 105 57.1
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.3e-24 116.7 112 54.5
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.3e-24 116.7 105 56.2
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.3e-24 116.7 105 56.2
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.6e-24 116.3 112 56.2
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.2e-24 115.9 105 56.2
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 2.2e-24 115.9 112 56.2
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.8e-24 115.5 112 55.4
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.8e-24 115.5 112 54.5
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 3.7e-24 115.2 112 53.6
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 3.7e-24 115.2 112 53.6
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 4.8e-24 114.8 112 52.7
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 4.8e-24 114.8 112 52.7
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 6.3e-24 114.4 105 55.2
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 6.3e-24 114.4 105 55.2
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 6.3e-24 114.4 116 53.4
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.3e-24 114.4 105 53.3
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 6.3e-24 114.4 104 55.8
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 6.3e-24 114.4 112 54.5
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 8.2e-24 114.0 112 54.5
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 8.2e-24 114.0 112 53.6
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 8.2e-24 114.0 105 54.3
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.1e-23 113.6 112 52.7
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.4e-23 113.2 112 52.7
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 1.4e-23 113.2 105 54.3
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.4e-23 113.2 105 54.3
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 1.4e-23 113.2 105 54.3
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.4e-23 113.2 112 54.5
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.4e-23 113.2 105 56.2
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.4e-23 113.2 105 54.3
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.4e-23 113.2 112 52.7
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.4e-23 113.2 105 52.4
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.8e-23 112.8 112 52.7
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.8e-23 112.8 112 52.7
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.8e-23 112.8 105 52.4
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.8e-23 112.8 105 52.4
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 1.8e-23 112.8 105 52.4
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.8e-23 112.8 104 53.8
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.4e-23 112.5 112 52.7
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 2.4e-23 112.5 112 51.8
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 2.4e-23 112.5 105 53.3
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 2.4e-23 112.5 112 53.6
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 3.1e-23 112.1 112 53.6
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 3.1e-23 112.1 112 52.7
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 4.1e-23 111.7 105 55.2
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 4.1e-23 111.7 112 52.7
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 4.1e-23 111.7 105 53.3
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 4.1e-23 111.7 105 52.4
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 5.3e-23 111.3 105 54.3
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 6.9e-23 110.9 105 55.2
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 6.9e-23 110.9 112 51.8
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 9.0e-23 110.5 105 56.2
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.0e-23 110.5 105 51.4
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 9.0e-23 110.5 112 51.8
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.2e-22 110.2 112 52.7
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 1.2e-22 110.2 105 55.2
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.2e-22 110.2 105 53.3
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.0e-22 109.4 112 49.1
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 2.0e-22 109.4 105 52.4
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 2.0e-22 109.4 112 51.8
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 2.0e-22 109.4 105 54.3
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 2.6e-22 109.0 105 52.4
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.6e-22 109.0 104 52.9
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 3.4e-22 108.6 105 53.3
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 4.5e-22 108.2 105 51.4
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 4.5e-22 108.2 105 52.4
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 4.5e-22 108.2 105 52.4
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 5.9e-22 107.8 112 50.9
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 5.9e-22 107.8 112 51.8
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 5.9e-22 107.8 112 50.9
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 5.9e-22 107.8 104 52.9
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 5.9e-22 107.8 104 51.9
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 7.6e-22 107.5 105 51.4
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.0e-21 107.1 112 50.0
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.0e-21 107.1 105 51.4
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 1.0e-21 107.1 112 51.8
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 2.2e-21 105.9 112 50.0
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 2.9e-21 105.5 105 50.5
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 2.9e-21 105.5 112 50.0
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 5.0e-21 104.8 104 51.0
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 6.5e-21 104.4 112 50.9
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.1e-20 103.6 112 50.0
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 2.5e-20 102.4 112 50.0
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.1e-19 99.4 105 45.7
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 3.6e-19 98.6 104 46.2
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 6.1e-19 97.8 77 62.3
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 7.9e-19 97.4 74 62.2
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.0e-18 97.1 104 48.1
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.0e-18 97.1 105 46.7
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.9e-18 95.1 113 47.8
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.1e-17 93.6 105 48.6
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.5e-17 93.2 105 44.8
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 2.8e-16 89.0 91 50.5
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.1e-15 87.0 114 46.5
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 4.5e-14 81.6 81 51.9
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.9e-13 79.0 75 48.0
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.5e-12 75.9 75 46.7
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.5e-12 75.9 75 46.7
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.2e-12 75.5 75 46.7
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 4.2e-12 75.1 104 39.4
PGSC0003DMG400037139 Solanum tuberosum HOM05D004433 ORTHO05D005251 5.5e-12 74.7 39 94.9
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.2e-11 73.6 112 40.2
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 2.7e-11 72.4 108 39.8
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.8e-10 69.7 77 44.2
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 8.8e-10 67.4 86 40.7
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 4.1e-07 58.5 63 44.4
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 4.1e-07 58.5 63 44.4


User provided reference genes

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