Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 2288.8 1317 100.0
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 2269.2 1317 98.3
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 2136.7 1317 91.4
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1920.2 1317 79.9
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1882.8 1261 83.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1854.0 1317 73.5
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1816.2 1317 72.7
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1808.9 1317 72.4
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1801.6 1303 73.1
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1794.2 1317 72.3
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1758.4 1317 71.5
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1734.5 1317 70.7
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1733.0 1317 69.7
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1726.5 1321 70.6
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1713.4 1317 69.2
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1713.0 1317 69.6
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1706.4 1317 69.5
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1698.7 1317 67.8
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1696.4 1318 70.3
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1694.9 1365 68.4
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1693.3 1317 68.4
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1689.1 1317 69.2
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1682.2 1317 69.2
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1679.1 1317 68.9
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1677.9 1317 67.9
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1669.8 1317 66.8
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1666.4 1317 66.7
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1666.0 1436 64.2
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1656.3 1317 67.2
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1655.6 1317 66.6
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1654.8 1303 71.6
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1649.4 1317 66.5
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1649.0 1317 67.5
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1649.0 1333 67.4
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1649.0 1317 67.2
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1648.6 1317 66.7
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1641.7 1317 68.6
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1639.8 1549 60.3
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1637.1 1317 66.1
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1634.4 1317 65.3
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1632.5 1325 67.4
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1631.3 1317 66.5
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1610.5 1317 65.3
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1608.2 1317 65.2
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1605.9 1317 66.7
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1601.3 1317 66.1
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1597.4 1343 65.5
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1590.5 1340 65.4
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1583.9 1317 66.3
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1583.5 1332 65.5
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1583.2 1332 65.5
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1583.2 1359 64.5
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1582.4 1318 69.0
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1577.4 1317 68.6
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1575.5 1318 68.9
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1575.1 1318 68.9
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1564.3 1317 64.8
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1563.9 1317 66.7
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1563.9 1370 62.4
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1553.9 1210 68.8
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1552.0 1318 63.7
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1533.9 1210 68.1
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1530.0 1303 64.3
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1520.4 1337 63.4
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1520.0 1317 64.3
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1517.7 1401 61.2
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1510.0 1317 62.4
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1509.2 1317 63.2
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1508.0 1317 62.1
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1502.3 1303 63.5
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1486.5 1318 62.7
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1486.1 1317 62.6
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1463.7 1254 63.4
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1461.4 1370 63.9
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1431.4 1303 61.3
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1279.2 1025 73.5
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1204.9 1317 51.3
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1127.1 1319 50.0
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 4.1e-307 1058.5 1319 46.6
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 1.0e-297 1027.3 1062 53.1
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 3.4e-293 1012.3 902 65.5
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 6.6e-289 998.0 1316 46.6
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 3.5e-282 975.7 1059 53.9
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 3.0e-265 919.5 1256 45.7
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.8e-262 910.2 743 64.9
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.4e-261 906.0 759 64.6
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 6.7e-257 891.7 888 57.5
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.3e-252 877.5 761 61.0
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.1e-248 864.4 1112 48.5
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 5.7e-248 862.1 767 62.6
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.3e-247 860.9 669 68.8
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 7.9e-242 841.6 631 68.6
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 5.1e-241 839.0 631 68.3
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 4.1e-230 802.7 790 57.7
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.4e-222 776.9 558 74.7
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 1.5e-219 767.7 729 57.8
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.5e-216 755.4 631 65.9
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 8.3e-215 751.9 1263 38.8
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 7.0e-214 748.8 728 55.5
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.2e-210 738.0 594 66.8
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.2e-210 738.0 594 66.8
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 3.6e-202 709.9 735 55.8
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 1.5e-187 661.4 592 62.7
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 8.7e-164 582.4 1375 32.6
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 5.8e-160 569.7 350 83.7
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 3.4e-152 543.9 524 60.5
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 9.3e-150 535.8 375 73.9
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.1e-139 502.3 1381 34.1
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.4e-137 494.6 296 86.1
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.9e-134 485.0 428 61.7
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 4.6e-133 480.3 389 64.8
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 4.6e-133 480.3 1347 32.0
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 4.8e-130 470.3 456 58.6
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 4.8e-122 443.7 1362 28.5
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.2e-118 430.6 244 88.9
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 8.0e-117 426.4 222 93.2
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 3.0e-116 424.5 264 82.6
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 3.2e-110 404.4 224 88.4
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 2.8e-106 391.3 846 36.9
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 6.3e-98 363.6 317 61.8
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 2.5e-94 351.7 187 94.1
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.4e-89 334.0 408 50.7
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.3e-87 329.3 223 75.3
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 4.0e-84 317.8 320 55.3
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 1.1e-70 273.1 177 77.4
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.5e-64 251.5 126 96.8
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.7e-55 222.6 140 84.3
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 1.8e-52 212.6 192 60.4
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 5.8e-51 207.6 139 80.6
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.7e-42 179.5 170 55.3
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 9.6e-38 163.7 173 53.8
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 4.8e-37 161.4 87 93.1
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.6e-35 155.6 106 77.4
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 3.2e-33 148.7 114 66.7
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 3.9e-31 141.7 72 87.5
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 4.1e-28 131.7 141 52.5
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.1e-22 113.6 100 63.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 3.7e-21 108.6 64 84.4
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 6.3e-21 107.8 106 59.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 5.3e-20 104.8 64 79.7
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.7e-18 99.8 90 58.9
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.4e-12 80.1 77 57.1
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 3.1e-12 79.0 121 45.5
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 1.7e-10 73.2 202 30.7
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.7e-10 73.2 80 55.0
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 8.5e-10 70.9 58 58.6
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 1.9e-09 69.7 63 63.5
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 3.6e-08 65.5 61 63.9
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 6.1e-08 64.7 56 67.9
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 1.4e-07 63.5 77 46.8
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 5.7e-06 58.2 33 87.9


User provided reference genes

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