Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g045920.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.2e-91 339.7 159 100.0
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 8.0e-56 220.7 141 78.0
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 2.3e-55 219.2 170 67.1
Dinv06676 Davidia involucrata HOM05D001987 ORTHO05D006514 5.7e-54 214.5 141 75.9
Psat7g012480 Pisum sativum HOM05D001987 ORTHO05D006514 7.5e-54 214.2 141 75.2
Solyc00g500100.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.5e-54 214.2 159 70.4
Solyc00g500117.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.5e-54 214.2 159 70.4
Solyc00g500274.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 7.5e-54 214.2 159 70.4
Cfa023008 Carpinus fangiana HOM05D001987 ORTHO05D006514 6.3e-53 211.1 141 74.5
Solyc00g500309.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.4e-52 209.9 159 69.8
LjContig00315g0000313 Lotus japonicus HOM05D001987 ORTHO05D006514 2.4e-52 209.1 159 67.9
Lalb_Chr00c21g0405751 Lupinus albus HOM05D001987 ORTHO05D006514 4.1e-52 208.4 157 68.2
Lalb_Chr00c24g0407071 Lupinus albus HOM05D001987 ORTHO05D006514 4.1e-52 208.4 157 68.2
TAR358G0001 Trochodendron aralioides HOM05D001987 ORTHO05D006514 1.0e-50 203.8 159 67.9
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 1.9e-49 199.5 159 66.0
Lsat_1_v5_gn_0_38040 Lactuca sativa HOM05D001987 ORTHO05D006514 5.6e-49 198.0 159 65.4
HanXRQChr16g0504311 Helianthus annuus HOM05D001987 ORTHO05D006514 1.6e-48 196.4 149 67.8
HanXRQMTg0579601 Helianthus annuus HOM05D001987 ORTHO05D006514 1.6e-48 196.4 149 67.8
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 3.6e-48 195.3 168 63.7
MBI05_g05348_MAGBIO Magnolia biondii HOM05D001987 ORTHO05D006514 4.7e-48 194.9 154 66.2
CDE02G0251 Ceratophyllum demersum HOM05D001987 ORTHO05D006514 3.1e-47 192.2 140 70.7
Ca_30750_v3 Cicer arietinum L. HOM05D001987 ORTHO05D006514 5.8e-46 188.0 128 73.4
HanXRQChr05g0147721 Helianthus annuus HOM05D001987 ORTHO05D006514 1.3e-45 186.8 149 65.1
Lalb_Chr11g0070101 Lupinus albus HOM05D001987 ORTHO05D006514 4.9e-45 184.9 145 66.2
Gorai.001G161500 Gossypium raimondii HOM05D001987 ORTHO05D006514 1.9e-44 183.0 148 63.5
CsaV3_UNG208600 Cucumis sativus L. HOM05D001987 ORTHO05D006514 3.2e-44 182.2 159 60.4
SalBow1G3504 Salvia bowleyana HOM05D001987 ORTHO05D006514 1.6e-43 179.9 128 71.1
SalBow1G4210 Salvia bowleyana HOM05D001987 ORTHO05D006514 1.6e-43 179.9 128 71.1
Hund30965 Selenicereus undatus HOM05D001987 ORTHO05D006514 6.2e-40 167.9 141 65.2
SHI20096 Sapria himalayana HOM05D001987 ORTHO05D006514 5.2e-39 164.9 141 61.0
Psat1g091000 Pisum sativum HOM05D001987 ORTHO05D006514 9.8e-38 160.6 117 69.2
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 1.7e-37 159.8 159 56.6
SHI29633 Sapria himalayana HOM05D001987 ORTHO05D006514 2.9e-37 159.1 141 61.0
Hund12658 Selenicereus undatus HOM05D001987 ORTHO05D006514 6.4e-37 157.9 141 61.7
Solyc09g015860.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.1e-36 157.1 96 79.2
Peaxi162Scf01098g00013 Petunia axillaris HOM05D001987 ORTHO05D006514 1.4e-36 156.8 117 70.9
ATMG00080 Arabidopsis thaliana HOM05D001987 ORTHO05D004018 5.4e-36 154.8 96 76.0
BolSC28t60316H Brassica oleracea HOM05D001987 ORTHO05D004018 5.4e-36 154.8 96 76.0
BraSC48t46331Z Brassica rapa HOM05D001987 ORTHO05D004018 5.4e-36 154.8 96 76.0
Thhalv10001268m.g Eutrema salsugineum HOM05D001987 ORTHO05D004018 5.4e-36 154.8 96 76.0
Actinidia34925 Actinidia chinensis HOM05D001987 ORTHO05D006514 7.1e-36 154.5 96 77.1
ClCG08G015640 Citrullus lanatus HOM05D001987 ORTHO05D006514 2.1e-35 152.9 147 57.8
SEGI_40200 Sequoiadendron giganteum HOM05D001987 ORTHO05D006514 4.6e-35 151.8 141 55.3
PGSC0003DMG400030936 Solanum tuberosum HOM05D001987 ORTHO05D004018 1.7e-34 149.8 96 76.0
Peaxi162Scf00934g00143 Petunia axillaris HOM05D001987 ORTHO05D006514 3.0e-34 149.1 127 61.4
HanXRQChr01g0013351 Helianthus annuus HOM05D001987 ORTHO05D004018 1.5e-33 146.7 96 74.0
Nitab4.5_0009561g0030 Nicotiana tabacum HOM05D001987 ORTHO05D004018 1.5e-33 146.7 106 67.9
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 5.6e-33 144.8 103 70.9
HanXRQChr01g0013341 Helianthus annuus HOM05D001987 ORTHO05D004018 7.3e-33 144.4 96 71.9
Sopen05g027050 Solanum pennellii HOM05D001987 ORTHO05D004018 7.3e-33 144.4 85 81.2
SGA_v2.0_scaffold339G49282 Striga asiatica HOM05D001987 ORTHO05D006514 4.0e-31 138.7 128 58.6
Hund27846 Selenicereus undatus HOM05D001987 ORTHO05D004018 5.2e-31 138.3 141 55.3
SGA_v2.0_scaffold255G45472 Striga asiatica HOM05D001987 ORTHO05D006514 8.9e-31 137.5 141 54.6
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 9.9e-30 134.0 85 74.1
arahy.Tifrunner.gnm1.ann1.D5EGR1 Arachis hypogaea HOM05D001987 ORTHO05D006514 9.9e-30 134.0 124 58.9
ClCG08G009700 Citrullus lanatus HOM05D001987 ORTHO05D004018 1.3e-29 133.7 95 70.5
RhsimMtG0002600 Rhododendron simsii HOM05D001987 ORTHO05D006514 1.1e-28 130.6 82 74.4
unitig_87.g28029 Utricularia gibba HOM05D001987 ORTHO05D006514 5.4e-28 128.3 128 56.2
Gohir.A13G113500 Gossypium hirsutum HOM05D001987 ORTHO05D006514 7.8e-27 124.4 141 50.4
Solyc05g045780.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 5.1e-26 121.7 96 63.5
SabraMtG0007200 Salix brachista HOM05D001987 ORTHO05D004018 6.6e-26 121.3 87 69.0
AL5G20250 Arabidopsis lyrata HOM05D001987 ORTHO05D016577 5.6e-25 118.2 76 73.7
Hund31335 Selenicereus undatus HOM05D001987 ORTHO05D004018 7.6e-22 107.8 68 76.5
SHI01964 Sapria himalayana HOM05D001987 ORTHO05D006514 2.4e-20 102.8 129 48.8
Aqoxy4G01609 Aquilegia oxysepala HOM05D001987 ORTHO05D004018 1.2e-19 100.5 67 71.6
Pp3c2_23477 Physcomitrium patens HOM05D001987 ORTHO05D004018 2.1e-19 99.8 96 56.2
DCAR_032447 Daucus carota HOM05D001987 ORTHO05D006514 1.0e-18 97.4 64 73.4
Solyc08g074700.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 1.3e-18 97.1 56 82.1
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 1.4e-15 87.0 44 93.2
TPR.G26049 Trifolium pratense HOM05D001987 ORTHO05D006514 2.4e-15 86.3 70 65.7
Peaxi162Scf00084g00915 Petunia axillaris HOM05D001987 ORTHO05D004018 3.1e-15 85.9 48 81.2
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 6.9e-15 84.7 44 90.9
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 6.9e-15 84.7 44 90.9
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 6.9e-15 84.7 44 90.9
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 6.9e-15 84.7 44 90.9
Nitab4.5_0002616g0170 Nicotiana tabacum HOM05D001987 ORTHO05D006514 9.0e-15 84.3 51 78.4
Cpa.g.sc1367.1 Carica papaya HOM05D001987 ORTHO05D006514 1.5e-14 83.6 44 88.6
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 2.6e-14 82.8 44 88.6
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 4.4e-14 82.0 44 88.6
Lj2P1221T93 Lonicera japonica HOM05D001987 ORTHO05D006514 4.4e-14 82.0 44 88.6
Lj2P1230T111 Lonicera japonica HOM05D001987 ORTHO05D006514 4.4e-14 82.0 44 88.6
Dinv35896 Davidia involucrata HOM05D001987 ORTHO05D006514 5.8e-14 81.6 44 88.6
Nitab4.5_0000330g0070 Nicotiana tabacum HOM05D001987 ORTHO05D006514 7.6e-14 81.3 43 88.4
Nitab4.5_0000451g0190 Nicotiana tabacum HOM05D001987 ORTHO05D006514 4.9e-13 78.6 50 74.0
Solyc03g063770.3 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.4e-13 78.2 48 77.1
AagrBONN_evm.TU.Sc2ySwM_117.831 Anthoceros agrestis HOM05D001987 ORTHO05D004018 1.1e-12 77.4 96 46.9
PGSC0003DMG400042640 Solanum tuberosum HOM05D001987 ORTHO05D004018 1.1e-12 77.4 42 81.0
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 3.2e-12 75.9 44 84.1
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 3.2e-12 75.9 44 84.1
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 3.2e-12 75.9 44 84.1
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 3.2e-12 75.9 44 84.1
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 3.2e-12 75.9 44 84.1
Nitab4.5_0007876g0050 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.2e-11 73.9 62 61.3
Nitab4.5_0009561g0020 Nicotiana tabacum HOM05D001987 ORTHO05D006514 1.6e-11 73.6 38 86.8
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 2.7e-11 72.8 44 77.3
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 2.7e-11 72.8 44 77.3
Ah.02g118900 Amaranthus hybridus HOM05D001987 ORTHO05D006514 7.9e-11 71.2 44 77.3
Ah.10g027970 Amaranthus hybridus HOM05D001987 ORTHO05D006514 7.9e-11 71.2 44 77.3
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 7.9e-11 71.2 44 77.3
arahy.Tifrunner.gnm1.ann1.L3L3JQ Arachis hypogaea HOM05D001987 ORTHO05D006514 7.9e-11 71.2 83 49.4
Nitab4.5_0010033g0070 Nicotiana tabacum HOM05D001987 ORTHO05D004018 1.7e-10 70.1 38 81.6
ATR0661G567 Amborella trichopoda HOM05D001987 ORTHO05D006514 3.0e-10 69.3 44 75.0
QL07p023375 Quercus lobata HOM05D001987 ORTHO05D004018 3.0e-10 69.3 38 78.9
Solyc05g045840.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 6.6e-10 68.2 83 48.2
RcHm_v2.0_Chr5g0031171 Rosa chinensis HOM05D001987 ORTHO05D004018 7.3e-09 64.7 106 38.7
Ciclev10013231m.g Citrus clementina HOM05D001987 ORTHO05D004018 1.6e-08 63.5 37 75.7
Peaxi162Scf00360g00815 Petunia axillaris HOM05D001987 ORTHO05D006514 1.6e-08 63.5 103 44.7
Lsat_1_v5_gn_8_92120 Lactuca sativa HOM05D001987 ORTHO05D004018 2.1e-08 63.2 94 36.2
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.8e-08 62.8 186 27.4
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 2.8e-08 62.8 186 27.4
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 2.8e-08 62.8 186 27.4
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 2.8e-08 62.8 186 27.4
HanXRQChr06g0172541 Helianthus annuus HOM05D001987 ORTHO05D004018 2.8e-08 62.8 93 37.6
PGR111G0010 Punica granatum HOM05D001987 ORTHO05D004018 6.2e-08 61.6 109 34.9
Medtr0002s0780 Medicago truncatula HOM05D001987 ORTHO05D004018 1.4e-07 60.5 114 35.1
SMO059G0001 Selaginella moellendorffii HOM05D001987 ORTHO05D004018 1.4e-07 60.5 105 31.4
SMO172G0196 Selaginella moellendorffii HOM05D001987 ORTHO05D004018 1.4e-07 60.5 105 31.4
PSO548G0086 Papaver somniferum HOM05D001987 ORTHO05D004018 1.8e-07 60.1 109 33.9
arahy.Tifrunner.gnm1.ann1.7A4IEF Arachis hypogaea HOM05D001987 ORTHO05D006514 2.4e-07 59.7 32 84.4
FvH4_3g18440 Fragaria vesca HOM05D001987 ORTHO05D004018 4.0e-07 58.9 87 40.2
FAN11G2273 Fragaria x ananassa HOM05D001987 ORTHO05D004018 4.0e-07 58.9 86 40.7
FAN16G3148 Fragaria x ananassa HOM05D001987 ORTHO05D004018 4.0e-07 58.9 87 40.2
Gohir.A12G024600 Gossypium hirsutum HOM05D001987 ORTHO05D004018 4.0e-07 58.9 89 37.1
FAN21G1218 Fragaria x ananassa HOM05D001987 ORTHO05D004018 5.3e-07 58.5 87 40.2
FAN25G2706 Fragaria x ananassa HOM05D001987 ORTHO05D004018 5.3e-07 58.5 87 40.2
Thhalv10018971m.g Eutrema salsugineum HOM05D001987 ORTHO05D004018 6.9e-07 58.2 105 35.2
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 9.0e-07 57.8 89 37.1
Haze_16657 Corylus avellana HOM05D001987 ORTHO05D004018 1.2e-06 57.4 103 35.0
Gohir.A05G396300 Gossypium hirsutum HOM05D001987 ORTHO05D004018 1.5e-06 57.0 89 36.0
Medtr4g034750 Medicago truncatula HOM05D001987 ORTHO05D004018 1.5e-06 57.0 89 36.0
PSO675G5880 Papaver somniferum HOM05D001987 ORTHO05D004018 2.0e-06 56.6 98 33.7
PSO675G6514 Papaver somniferum HOM05D001987 ORTHO05D004018 2.0e-06 56.6 98 33.7
Sed0015467 Sechium edule HOM05D001987 ORTHO05D004018 2.0e-06 56.6 101 35.6
BcaC08g46689 Brassica carinata HOM05D001987 ORTHO05D004018 2.6e-06 56.2 93 32.3
C06p46690 Brassica napus HOM05D001987 ORTHO05D004018 2.6e-06 56.2 93 32.3
BolC6t39714H Brassica oleracea HOM05D001987 ORTHO05D004018 2.6e-06 56.2 93 32.3
Gorai.004G166700 Gossypium raimondii HOM05D001987 ORTHO05D004018 2.6e-06 56.2 105 33.3
RcHm_v2.0_MTg0498421 Rosa chinensis HOM05D001987 ORTHO05D004018 2.6e-06 56.2 31 77.4
A07p38510 Brassica napus HOM05D001987 ORTHO05D004018 3.4e-06 55.8 93 32.3
BraA07t31411Z Brassica rapa HOM05D001987 ORTHO05D004018 3.4e-06 55.8 93 32.3
Gohir.1Z049934 Gossypium hirsutum HOM05D001987 ORTHO05D004018 4.5e-06 55.5 89 34.8
LjContig00318g0015359 Lotus japonicus HOM05D001987 ORTHO05D004018 4.5e-06 55.5 94 34.0
Psat3g190880 Pisum sativum HOM05D001987 ORTHO05D004018 4.5e-06 55.5 93 33.3
TAR375G0860 Trochodendron aralioides HOM05D001987 ORTHO05D004018 4.5e-06 55.5 89 34.8
BcaB03g14981 Brassica carinata HOM05D001987 ORTHO05D004018 5.8e-06 55.1 93 31.2
Gohir.1Z049902 Gossypium hirsutum HOM05D001987 ORTHO05D004018 5.8e-06 55.1 89 33.7
ATMG00090 Arabidopsis thaliana HOM05D001987 ORTHO05D006514 7.6e-06 54.7 43 67.4
Ciclev10004001m.g Citrus clementina HOM05D001987 ORTHO05D004018 7.6e-06 54.7 89 34.8
Medtr1779s0010 Medicago truncatula HOM05D001987 ORTHO05D004018 7.6e-06 54.7 89 33.7
Nn002s41363 Nelumbo nucifera HOM05D001987 ORTHO05D004018 7.6e-06 54.7 89 33.7
MELO3C000108.2 Cucumis melo HOM05D001987 ORTHO05D004018 9.9e-06 54.3 89 34.8
Solyc06g008140.1 Solanum lycopersicum HOM05D001987 ORTHO05D004018 9.9e-06 54.3 38 63.2


User provided reference genes

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