Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 3.3e-124 448.4 225 100.0
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 9.1e-122 440.3 225 98.2
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.7e-105 385.6 215 89.8
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.0e-104 383.6 215 88.8
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 2.0e-100 369.4 225 83.6
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 1.4e-93 346.7 261 71.6
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 2.8e-86 322.4 170 95.3
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 1.1e-69 267.3 224 62.5
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 5.2e-69 265.0 225 62.7
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 2.6e-68 262.7 225 64.9
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 7.6e-68 261.2 225 61.8
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 2.2e-67 259.6 225 61.8
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 2.9e-67 259.2 226 63.3
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.9e-66 256.5 222 62.6
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 7.1e-66 254.6 225 61.3
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 4.6e-65 251.9 230 58.3
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.7e-64 250.0 230 60.0
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 3.9e-64 248.8 229 58.5
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 5.1e-64 248.4 229 59.8
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 1.5e-63 246.9 228 57.9
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.9e-63 246.5 225 59.6
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 3.3e-63 245.7 230 58.7
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 4.3e-63 245.4 230 56.1
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 5.6e-63 245.0 230 58.3
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 9.6e-63 244.2 230 57.4
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 3.6e-62 242.3 230 56.5
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 4.8e-62 241.9 225 56.4
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 8.1e-62 241.1 229 59.4
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.1e-61 240.7 228 56.6
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 1.4e-61 240.4 230 57.4
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.8e-61 240.0 228 56.6
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 2.4e-61 239.6 230 58.3
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 2.4e-61 239.6 230 56.5
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 4.0e-61 238.8 226 55.8
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 6.9e-61 238.0 227 55.9
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 9.0e-61 237.7 227 55.5
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 9.0e-61 237.7 230 54.3
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 1.2e-60 237.3 225 57.8
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.5e-60 236.9 225 57.3
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.5e-60 236.9 227 55.9
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 2.0e-60 236.5 230 56.1
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 2.6e-60 236.1 228 56.1
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 3.4e-60 235.7 225 55.6
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 5.8e-60 235.0 193 61.7
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 7.6e-60 234.6 228 56.1
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 9.9e-60 234.2 225 58.2
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.3e-59 233.8 230 54.8
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.7e-59 233.4 200 62.0
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.7e-59 233.4 226 54.4
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 2.2e-59 233.0 226 54.9
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.2e-59 233.0 230 57.4
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 2.9e-59 232.6 226 54.4
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 3.8e-59 232.3 226 54.4
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 3.8e-59 232.3 226 54.4
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 3.8e-59 232.3 226 54.4
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 3.8e-59 232.3 264 50.8
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 6.4e-59 231.5 231 55.4
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 6.4e-59 231.5 228 56.6
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 6.4e-59 231.5 235 56.6
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 1.1e-58 230.7 228 54.8
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.1e-58 230.7 226 54.4
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 1.1e-58 230.7 215 60.0
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 1.4e-58 230.3 227 53.7
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.4e-58 230.3 234 57.3
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.9e-58 229.9 226 54.0
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-58 229.9 230 56.5
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-58 229.9 230 56.5
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.9e-58 229.9 230 56.5
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.4e-58 229.6 228 56.6
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.4e-58 229.6 230 56.5
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 3.2e-58 229.2 192 59.9
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 3.2e-58 229.2 232 55.2
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.2e-58 228.8 230 56.1
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 5.4e-58 228.4 192 59.4
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 5.4e-58 228.4 181 65.2
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 7.1e-58 228.0 226 53.5
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.1e-58 228.0 230 56.1
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.1e-58 228.0 230 56.1
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 9.3e-58 227.6 232 56.5
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.2e-57 227.3 234 56.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.6e-57 226.9 191 60.2
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-57 226.9 230 56.1
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 3.5e-57 225.7 232 54.7
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 4.6e-57 225.3 234 56.4
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 6.0e-57 224.9 234 52.6
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 1.0e-56 224.2 228 53.5
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 1.3e-56 223.8 236 54.2
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 1.3e-56 223.8 240 51.2
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 1.7e-56 223.4 229 54.1
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.7e-56 223.4 227 55.5
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 2.3e-56 223.0 232 55.6
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 2.3e-56 223.0 232 56.0
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 3.0e-56 222.6 236 54.2
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 3.0e-56 222.6 282 47.9
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 6.6e-56 221.5 257 49.8
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.9e-55 219.9 236 54.7
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 4.3e-55 218.8 226 54.4
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 4.3e-55 218.8 237 54.9
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 4.3e-55 218.8 220 54.5
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 5.6e-55 218.4 236 53.0
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.3e-54 217.2 223 52.9
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 1.6e-54 216.9 215 53.0
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 3.6e-54 215.7 225 54.7
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 6.2e-54 214.9 229 53.7
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 8.1e-54 214.5 221 53.4
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.1e-53 214.2 179 62.0
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.4e-53 213.8 210 55.2
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 6.9e-53 211.5 232 49.1
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 2.6e-52 209.5 228 50.9
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 3.4e-52 209.1 201 56.7
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 5.8e-52 208.4 275 46.2
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 8.4e-51 204.5 245 48.6
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.1e-50 204.1 210 55.7
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 3.2e-50 202.6 214 55.1
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 3.5e-49 199.1 192 55.2
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 5.6e-47 191.8 195 52.3
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 4.8e-46 188.7 200 52.5
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.0e-45 184.5 209 52.6
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.0e-43 181.0 250 43.6
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 5.5e-42 175.3 139 65.5
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 7.1e-42 174.9 194 54.6
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.5e-41 172.6 166 58.4
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.1e-39 167.5 194 49.0
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 1.9e-39 166.8 360 34.4
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.0e-37 157.9 142 60.6
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 2.0e-36 156.8 150 58.7
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.3e-35 154.1 146 58.2
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 2.2e-35 153.3 100 77.0
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 5.5e-34 148.7 177 49.7
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 7.2e-34 148.3 122 63.9
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 4.6e-33 145.6 142 54.9
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 3.0e-32 142.9 113 65.5
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.5e-31 139.8 140 56.4
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.3e-30 135.2 150 53.3
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 2.4e-29 133.3 139 56.8
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 6.5e-27 125.2 102 60.8
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.4e-26 124.0 181 40.3
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 5.5e-26 122.1 124 53.2
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 1.7e-22 110.5 180 37.2
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.8e-21 107.1 180 35.6
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 2.6e-20 103.2 121 47.1
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 5.9e-20 102.1 148 44.6
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 8.5e-19 98.2 189 34.4
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 4.7e-17 92.4 68 64.7
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.7e-15 85.5 62 61.3
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.7e-14 84.0 92 48.9
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 3.1e-13 79.7 92 46.7
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 1.3e-11 74.3 136 39.0
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 8.0e-09 65.1 50 62.0
PGSC0003DMG400041709 Solanum tuberosum HOM05D005275 ORTHO05D006435 2.0e-07 60.5 73 56.2


User provided reference genes

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