Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 3.1e-200 701.8 409 100.0
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 1.7e-195 686.0 410 98.3
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 3.8e-166 588.6 414 79.5
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 3.9e-139 498.8 414 71.5
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 7.4e-138 494.6 414 73.7
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 3.2e-109 399.4 415 62.2
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 1.6e-76 290.8 416 51.0
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 1.2e-71 274.6 428 47.2
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 1.7e-70 270.8 420 42.9
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 1.7e-70 270.8 431 46.4
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 1.8e-67 260.8 388 41.5
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 4.0e-67 259.6 386 42.7
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 6.4e-65 252.3 403 45.4
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 8.3e-65 251.9 413 42.9
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 8.3e-65 251.9 411 42.1
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 2.4e-64 250.4 425 40.5
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 3.2e-64 250.0 424 46.9
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 5.4e-64 249.2 402 44.3
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 8.6e-62 241.9 309 50.2
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 2.8e-60 236.9 484 40.9
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 6.2e-60 235.7 317 46.4
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 1.8e-59 234.2 403 39.0
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 1.5e-58 231.1 330 43.0
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 7.1e-56 222.2 417 42.0
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 2.1e-55 220.7 323 42.4
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 3.5e-55 219.9 324 42.9
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 4.6e-55 219.5 405 41.5
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 1.7e-54 217.6 337 41.5
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 1.7e-54 217.6 384 40.4
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 2.3e-54 217.2 305 45.6
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 2.3e-54 217.2 326 44.5
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 8.7e-54 215.3 296 46.3
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 1.1e-53 214.9 304 45.4
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 1.9e-53 214.2 319 42.6
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 7.3e-53 212.2 334 38.6
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 2.1e-52 210.7 326 43.6
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 2.1e-52 210.7 405 38.8
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 2.8e-52 210.3 323 43.0
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 4.8e-52 209.5 384 38.3
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 6.2e-52 209.1 427 37.9
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 1.4e-51 208.0 332 42.2
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.8e-51 207.6 327 41.3
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 3.1e-51 206.8 319 42.9
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 5.3e-51 206.1 328 40.9
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 6.9e-51 205.7 324 42.6
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 9.0e-51 205.3 305 44.9
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 9.0e-51 205.3 305 44.9
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 9.0e-51 205.3 313 40.6
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 1.2e-50 204.9 312 41.3
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 2.6e-50 203.8 375 42.7
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 3.4e-50 203.4 385 42.6
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 3.4e-50 203.4 350 38.3
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 9.9e-50 201.8 171 57.3
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 1.3e-49 201.4 364 44.0
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 1.7e-49 201.1 456 36.8
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 4.9e-49 199.5 268 43.7
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 6.4e-49 199.1 220 50.0
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 6.4e-49 199.1 220 50.0
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 1.1e-48 198.4 382 36.6
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.9e-48 197.6 378 38.4
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 1.9e-48 197.6 408 35.3
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 2.4e-48 197.2 325 40.6
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 2.4e-48 197.2 314 42.4
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 4.2e-48 196.4 324 38.9
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 7.1e-48 195.7 409 34.0
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 1.2e-47 194.9 397 36.5
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 1.6e-47 194.5 382 41.9
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 4.6e-47 193.0 384 35.9
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 1.0e-46 191.8 392 34.9
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 1.3e-46 191.4 325 41.8
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 1.1e-45 188.3 423 35.2
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 1.9e-45 187.6 465 35.9
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 4.3e-45 186.4 487 36.3
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 5.6e-45 186.0 169 53.8
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 7.3e-45 185.7 295 39.0
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 2.1e-44 184.1 420 34.0
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 3.6e-44 183.3 170 53.5
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 4.8e-44 183.0 396 35.4
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 6.2e-44 182.6 415 32.8
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 1.8e-43 181.0 168 52.4
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 2.4e-43 180.6 410 33.7
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 4.0e-43 179.9 412 34.5
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 5.3e-43 179.5 422 32.9
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 6.9e-43 179.1 284 40.5
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 5.8e-42 176.0 232 45.7
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 2.9e-41 173.7 316 36.7
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 2.9e-41 173.7 397 34.8
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 4.9e-41 172.9 397 34.5
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.4e-40 171.4 406 38.4
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 3.2e-40 170.2 173 52.0
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 7.1e-40 169.1 270 38.1
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.5e-39 166.8 424 33.5
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 6.0e-39 166.0 405 33.6
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.0e-38 163.7 264 39.4
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 3.9e-38 163.3 163 49.1
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 1.9e-37 161.0 285 40.7
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 2.1e-36 157.5 298 37.2
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.5e-34 151.4 427 31.9
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.6e-34 150.6 258 38.8
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 1.2e-31 141.7 167 43.7
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 1.6e-31 141.4 164 42.1
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 6.0e-31 139.4 158 44.3
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 4.3e-29 133.3 252 37.7
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 8.2e-28 129.0 163 41.7
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 4.5e-26 123.2 182 37.4
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 7.6e-26 122.5 152 43.4
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 2.9e-25 120.6 166 38.6
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 1.0e-22 112.1 183 35.0
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 3.7e-20 103.6 80 65.0
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 6.9e-19 99.4 142 38.0
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 3.6e-15 87.0 66 60.6
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.8e-11 74.7 128 56.2
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 4.5e-10 70.1 53 58.5
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 5.9e-10 69.7 63 52.4


User provided reference genes

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