Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.8e-190 669.1 336 100.0
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 7.6e-189 663.7 336 99.1
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 4.6e-178 627.9 336 94.3
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 3.5e-162 575.1 337 87.5
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.9e-153 545.0 336 84.2
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.5e-144 516.5 338 79.9
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 1.2e-133 480.3 334 72.5
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.3e-132 476.9 339 73.2
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 3.0e-129 465.7 337 70.6
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 2.0e-128 463.0 290 76.6
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 4.4e-128 461.8 336 69.6
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 9.7e-128 460.7 333 71.2
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 9.7e-128 460.7 334 71.0
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.2e-127 459.5 331 69.5
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 2.2e-127 459.5 293 74.4
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 2.2e-127 459.5 295 77.6
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 2.8e-127 459.1 344 69.5
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 4.8e-127 458.4 331 70.7
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 2.4e-126 456.1 334 70.4
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 3.1e-126 455.7 310 76.1
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 5.3e-126 454.9 327 71.9
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 7.0e-126 454.5 322 72.7
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 7.0e-126 454.5 349 69.1
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 9.1e-126 454.1 330 69.7
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.2e-125 453.8 293 75.1
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 1.6e-125 453.4 307 72.6
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 2.0e-125 453.0 333 72.4
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 7.7e-125 451.1 335 70.7
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 7.7e-125 451.1 323 71.2
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 2.9e-124 449.1 329 70.2
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 3.8e-124 448.7 283 77.4
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 6.5e-124 448.0 285 76.5
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 8.5e-124 447.6 325 71.7
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.1e-123 447.2 346 67.6
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.9e-123 446.4 331 69.8
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 3.2e-123 445.7 329 69.9
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 4.2e-123 445.3 337 68.8
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 4.2e-123 445.3 337 68.8
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 6.1e-122 441.4 337 68.5
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 6.1e-122 441.4 337 68.5
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.4e-121 440.3 300 72.0
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 3.0e-121 439.1 342 68.7
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 8.8e-121 437.6 263 80.6
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.2e-120 437.2 319 68.3
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.2e-120 437.2 329 70.2
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 2.8e-119 432.6 336 66.4
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 4.8e-119 431.8 324 67.0
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 6.3e-119 431.4 328 68.6
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 6.3e-119 431.4 341 66.9
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 8.3e-119 431.0 341 66.6
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.4e-118 430.3 302 68.2
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 5.3e-118 428.3 328 69.5
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 7.0e-118 427.9 333 65.8
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 7.0e-118 427.9 301 69.1
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 9.1e-118 427.6 319 67.4
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 9.1e-118 427.6 268 83.6
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 9.1e-118 427.6 286 73.4
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.6e-117 426.8 319 66.8
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.6e-117 426.8 301 68.1
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.7e-116 423.3 318 69.5
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 3.8e-116 422.2 305 67.2
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 5.0e-116 421.8 329 66.0
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 8.5e-116 421.0 329 66.9
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 8.5e-116 421.0 250 80.4
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 1.5e-115 420.2 330 65.8
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 3.2e-115 419.1 330 66.4
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 4.2e-115 418.7 341 66.3
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 5.5e-115 418.3 318 67.0
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 9.4e-115 417.5 316 66.5
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 1.6e-114 416.8 340 66.8
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.7e-114 415.2 287 71.4
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.6e-112 409.5 254 76.0
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 4.4e-112 408.7 334 64.7
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 1.4e-110 403.7 225 84.9
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 9.1e-110 401.0 343 61.8
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 1.6e-109 400.2 337 64.1
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 4.5e-109 398.7 222 84.2
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.7e-108 396.7 286 69.2
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 2.9e-108 396.0 223 83.0
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 1.5e-107 393.7 295 69.2
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 1.9e-107 393.3 286 69.6
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.6e-106 390.2 327 62.7
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 1.2e-104 384.0 319 62.4
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 1.8e-102 376.7 287 66.2
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 1.6e-98 363.6 349 58.7
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.4e-97 360.5 205 83.9
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 2.0e-96 356.7 300 62.7
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 3.4e-96 355.9 341 57.5
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 5.4e-94 348.6 336 58.3
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 2.7e-93 346.3 226 75.2
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 2.3e-92 343.2 257 65.0
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 3.9e-92 342.4 336 58.0
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 6.6e-92 341.7 329 57.8
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 6.6e-92 341.7 227 70.9
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 6.6e-92 341.7 227 70.9
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 7.5e-88 328.2 495 43.0
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 6.0e-85 318.5 266 63.5
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 9.9e-80 301.2 267 61.0
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 8.3e-79 298.1 257 56.0
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.7e-76 290.4 167 81.4
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 2.1e-74 283.5 288 49.3
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 7.1e-70 268.5 288 48.6
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 8.7e-68 261.5 224 61.2
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 9.0e-65 251.5 144 84.0
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.6e-64 250.0 220 56.4
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.0e-60 236.5 213 56.3
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 3.9e-60 236.1 226 57.1
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.9e-59 233.8 205 53.2
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 3.1e-57 226.5 184 65.8
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 4.5e-56 222.6 215 57.2
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.2e-54 216.5 249 51.8
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.5e-45 186.4 165 59.4
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 2.5e-38 163.7 97 80.4
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 1.5e-35 154.5 109 71.6
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 9.0e-33 145.2 175 40.6
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 3.3e-27 126.7 154 46.1
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 3.4e-24 116.7 61 85.2
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 4.2e-22 109.8 145 42.8
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.2e-21 108.2 105 55.2
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.6e-13 81.3 43 88.4
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.4e-09 67.4 68 50.0
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.4e-09 67.4 68 50.0
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 4.5e-08 63.2 179 34.6
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.1e-06 58.5 64 46.9


User provided reference genes

Program Settings