Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 0.0e+00 1094.3 629 100.0
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 4.7e-309 1063.9 629 97.3
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 1.2e-240 836.6 638 76.3
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.7e-231 804.3 646 74.5
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 2.2e-221 772.7 660 68.0
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.4e-159 567.4 720 52.4
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 3.8e-157 559.3 627 55.7
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 8.4e-157 558.1 627 56.8
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 1.4e-156 557.4 705 50.5
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 3.0e-154 549.7 640 52.5
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 5.8e-150 535.4 629 54.4
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.9e-148 530.4 641 55.9
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 5.4e-148 528.9 627 49.9
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 3.9e-146 522.7 597 55.4
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 1.5e-145 520.8 638 54.5
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 5.6e-145 518.8 615 51.5
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 9.6e-145 518.1 597 53.6
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 2.8e-144 516.5 725 49.1
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 6.2e-144 515.4 586 58.2
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 1.1e-143 514.6 648 52.3
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 2.0e-142 510.4 610 56.7
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 7.6e-142 508.4 630 52.2
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 6.4e-141 505.4 610 56.1
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 7.1e-140 501.9 476 59.2
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 2.1e-139 500.4 492 58.5
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 3.5e-139 499.6 599 54.1
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 6.0e-139 498.8 635 49.9
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 6.0e-139 498.8 631 51.5
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 3.9e-138 496.1 657 49.6
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 3.9e-138 496.1 389 68.1
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 5.1e-138 495.7 633 47.9
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 6.7e-138 495.4 656 54.3
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 8.7e-138 495.0 654 49.8
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 1.1e-137 494.6 604 53.8
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 3.1e-135 486.5 766 47.8
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 4.0e-135 486.1 391 72.4
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 2.6e-134 483.4 630 51.1
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 5.8e-134 482.3 591 48.9
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 8.4e-133 478.4 579 53.9
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 1.6e-131 474.2 622 51.6
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 2.3e-130 470.3 578 51.2
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 3.9e-130 469.5 386 71.8
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 5.1e-130 469.2 655 50.5
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 1.5e-129 467.6 303 75.2
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 4.3e-129 466.1 386 68.9
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 5.7e-129 465.7 604 51.5
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 1.6e-128 464.2 713 47.1
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 1.6e-128 464.2 708 45.2
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 2.2e-128 463.8 634 46.7
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 3.7e-128 463.0 582 53.3
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 1.1e-127 461.5 368 72.3
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 1.1e-127 461.5 593 51.8
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 4.1e-127 459.5 670 48.7
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 2.0e-126 457.2 646 50.5
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 1.0e-125 454.9 580 50.3
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 5.0e-125 452.6 365 62.7
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.1e-124 451.4 644 45.7
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 3.2e-124 449.9 478 57.3
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 2.1e-123 447.2 615 49.6
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 2.7e-123 446.8 562 52.3
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 3.0e-122 443.4 302 67.5
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 3.9e-122 443.0 489 52.8
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 6.3e-120 435.6 636 47.5
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 6.9e-119 432.2 654 42.7
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 1.5e-118 431.0 605 48.8
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.7e-117 427.6 274 72.3
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 4.2e-116 422.9 616 47.9
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 4.2e-116 422.9 616 47.9
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.1e-115 420.6 609 48.3
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 7.9e-115 418.7 616 47.4
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 1.4e-114 417.9 605 49.8
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.4e-114 417.9 629 47.7
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 5.1e-114 416.0 605 45.1
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 6.7e-114 415.6 614 47.4
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 1.1e-113 414.8 435 55.4
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 1.5e-113 414.5 302 65.9
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 2.6e-113 413.7 604 49.2
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 7.4e-113 412.1 392 59.4
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 4.8e-112 409.5 611 48.3
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 2.4e-111 407.1 496 49.4
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 6.9e-111 405.6 609 47.1
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.2e-110 404.8 604 46.9
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 1.2e-110 404.8 635 48.0
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 2.0e-110 404.1 635 46.0
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 2.2e-109 400.6 476 48.5
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 6.5e-109 399.1 306 63.4
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.7e-107 392.9 472 50.6
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 3.9e-106 389.8 380 61.3
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 2.8e-104 383.6 675 40.7
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.8e-104 383.6 400 51.5
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 5.0e-101 372.9 387 59.4
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 8.8e-98 362.1 468 51.3
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.5e-97 361.3 300 57.7
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 3.7e-96 356.7 397 50.4
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 3.7e-96 356.7 298 56.7
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 8.2e-96 355.5 277 79.8
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 3.1e-95 353.6 303 56.8
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 7.7e-94 349.0 301 56.8
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 1.3e-93 348.2 396 53.0
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 2.9e-93 347.1 461 45.6
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 2.9e-93 347.1 461 45.6
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.9e-93 347.1 286 72.4
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 4.2e-92 343.2 466 49.1
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.2e-91 341.7 603 43.0
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 1.0e-90 338.6 465 48.2
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 5.2e-90 336.3 656 39.3
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 4.5e-86 323.2 310 52.9
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 9.8e-81 305.4 302 53.3
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.3e-80 305.1 542 40.6
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 3.5e-78 297.0 253 60.5
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 1.5e-73 281.6 327 45.0
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 9.8e-73 278.9 327 45.6
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.6e-70 270.0 608 36.5
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 2.5e-68 264.2 325 40.6
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 7.3e-68 262.7 479 45.5
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 2.3e-66 257.7 180 68.3
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 5.0e-61 240.0 616 33.8
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.2e-54 218.8 263 47.9
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 1.9e-47 194.9 123 77.2
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 2.2e-40 171.4 262 39.3
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.4e-34 152.1 282 36.2
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 3.2e-31 141.0 70 98.6
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 5.1e-29 133.7 185 40.5
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.9e-28 131.7 106 62.3
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 1.4e-18 99.0 61 77.0
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 2.4e-18 98.2 380 42.4
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 9.0e-18 96.3 231 33.8
Sopen10g026440 Solanum pennellii HOM05D005778 ORTHO05D007245 6.5e-16 90.1 46 97.8
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.6e-14 85.5 62 59.7
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 3.3e-12 77.8 58 55.2
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 5.7e-12 77.0 59 59.3
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 4.5e-09 67.4 45 75.6
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.7e-08 65.5 53 60.4


User provided reference genes

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