Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 2.1e-149 532.3 272 100.0
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 3.2e-105 385.6 201 99.0
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 4.3e-102 375.2 199 97.5
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 3.1e-100 369.0 205 92.2
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 7.9e-96 354.4 201 91.5
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 4.8e-93 345.1 201 89.1
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 4.1e-92 342.0 192 91.7
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 5.3e-84 315.1 196 82.7
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 2.7e-83 312.8 196 81.6
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.0e-82 310.8 191 81.7
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.7e-82 310.1 189 83.1
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 1.7e-82 310.1 189 83.1
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 2.9e-82 309.3 196 79.1
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 3.8e-82 308.9 194 83.5
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 1.9e-81 306.6 193 80.8
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 2.5e-81 306.2 191 81.2
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 2.5e-81 306.2 192 80.7
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 3.2e-81 305.8 197 77.2
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 4.2e-81 305.4 191 80.6
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 4.2e-81 305.4 197 78.2
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 4.2e-81 305.4 194 79.9
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 5.5e-81 305.1 191 79.6
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 2.1e-80 303.1 196 78.6
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 4.7e-80 302.0 198 77.8
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 4.7e-80 302.0 194 77.8
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 4.7e-80 302.0 194 77.8
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 6.1e-80 301.6 195 79.5
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 8.0e-80 301.2 198 77.3
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 1.0e-79 300.8 194 78.9
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 1.4e-79 300.4 196 77.0
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 1.8e-79 300.1 198 77.8
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 1.8e-79 300.1 198 76.8
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 2.3e-79 299.7 192 80.2
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 4.0e-79 298.9 199 76.9
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 6.8e-79 298.1 193 76.7
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 8.8e-79 297.7 205 73.7
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 1.2e-78 297.4 194 76.3
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 2.6e-78 296.2 205 72.7
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 2.6e-78 296.2 200 77.0
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.3e-77 293.9 197 75.6
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 1.3e-77 293.9 191 78.0
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 1.3e-77 293.9 200 77.0
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 3.7e-77 292.4 192 76.6
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 4.8e-77 292.0 196 76.5
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 8.3e-77 291.2 194 77.3
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.1e-76 290.8 197 74.1
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 1.4e-76 290.4 193 77.2
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 3.1e-76 289.3 188 76.6
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 3.1e-76 289.3 196 75.0
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 4.1e-76 288.9 191 78.0
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 5.4e-76 288.5 192 78.1
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.0e-76 288.1 187 76.5
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.0e-76 288.1 187 76.5
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 9.1e-76 287.7 218 70.6
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 9.1e-76 287.7 188 76.1
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 1.2e-75 287.3 193 75.6
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 1.2e-75 287.3 188 77.7
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.6e-75 287.0 187 75.9
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 1.6e-75 287.0 178 79.2
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 2.0e-75 286.6 190 76.3
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 2.7e-75 286.2 190 76.8
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 2.7e-75 286.2 188 77.7
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 4.5e-75 285.4 188 76.1
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 4.5e-75 285.4 188 76.1
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 4.5e-75 285.4 186 78.5
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 7.7e-75 284.6 195 75.4
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 7.7e-75 284.6 204 74.5
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 1.0e-74 284.3 188 75.5
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 1.0e-74 284.3 188 75.5
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 1.0e-74 284.3 191 74.3
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 1.3e-74 283.9 188 75.5
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 2.2e-74 283.1 202 70.8
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 2.9e-74 282.7 187 78.6
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 5.0e-74 282.0 190 74.7
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 5.0e-74 282.0 194 72.7
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 8.5e-74 281.2 193 75.6
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 5.5e-73 278.5 196 74.5
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 2.7e-72 276.2 188 74.5
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 6.1e-72 275.0 188 76.6
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 6.1e-72 275.0 255 61.2
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 8.0e-72 274.6 204 71.6
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 1.0e-71 274.2 190 73.2
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 1.0e-71 274.2 194 71.6
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 1.0e-71 274.2 244 62.7
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 3.0e-71 272.7 204 72.5
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 4.0e-71 272.3 188 73.9
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 2.3e-66 256.5 163 79.1
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 6.6e-66 255.0 190 67.9
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 6.8e-63 245.0 188 68.1
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 2.0e-62 243.4 170 71.2
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 6.4e-61 238.4 194 64.4
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.7e-58 230.3 166 74.1
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 5.0e-58 228.8 193 65.3
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.1e-57 227.6 194 64.9
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 1.2e-56 224.2 148 75.7
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 1.2e-56 224.2 185 63.8
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.8e-56 223.0 187 65.8
Dinv06003 Davidia involucrata HOM05D000780 ORTHO05D008187 8.3e-53 211.5 136 79.4
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 4.7e-48 195.7 255 49.4
TWI60G0996 Tripterygium wilfordii HOM05D000780 ORTHO05D008187 4.7e-48 195.7 136 74.3
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 1.8e-47 193.7 110 87.3
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 3.1e-47 193.0 121 83.5
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 5.8e-46 188.7 138 71.7
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 7.5e-46 188.3 112 83.9
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 1.7e-45 187.2 113 81.4
Zm00001eb258800 Zea mays HOM05D000780 ORTHO05D008187 6.4e-45 185.3 138 68.1
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 2.8e-40 169.9 198 50.5
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 2.9e-37 159.8 200 48.5
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 8.4e-37 158.3 84 92.9
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 5.4e-36 155.6 105 74.3
ClCG03G011510 Citrullus lanatus HOM05D000780 ORTHO05D008187 3.5e-35 152.9 111 71.2
Dinv18279 Davidia involucrata HOM05D000780 ORTHO05D008187 7.8e-35 151.8 116 69.0
Haze_04451 Corylus avellana HOM05D000780 ORTHO05D008187 5.2e-31 139.0 138 56.5
AagrBONN_evm.TU.Sc2ySwM_228.3966 Anthoceros agrestis HOM05D000780 ORTHO05D008187 3.4e-30 136.3 140 54.3
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 1.6e-24 117.5 141 52.5
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 6.9e-23 112.1 153 45.8
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 2.9e-21 106.7 96 60.4
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 2.7e-19 100.1 199 34.7
SalBow1G3250 Salvia bowleyana HOM05D000780 ORTHO05D008187 6.0e-19 99.0 81 60.5
SalBow1G5540 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.8e-15 87.4 81 56.8
Cpa.g.c42374 Carica papaya HOM05D000780 ORTHO05D008187 2.7e-11 73.6 50 68.0
SalBow1G1556 Salvia bowleyana HOM05D000111 ORTHO05D013786 3.5e-11 73.2 109 45.0
Psat7g095160 Pisum sativum HOM05D000780 ORTHO05D008187 1.1e-07 61.6 56 53.6
SalBow1G6941 Salvia bowleyana HOM05D000780 ORTHO05D008187 1.1e-07 61.6 54 55.6


User provided reference genes

Program Settings