Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.5e-58 228.0 112 100.0
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 1.1e-38 163.3 167 58.1
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 9.4e-35 150.2 167 52.7
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 9.4e-35 150.2 167 52.7
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 2.1e-34 149.1 167 53.9
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.7e-34 148.7 167 53.3
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.7e-34 148.7 167 53.3
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.7e-34 147.9 143 58.0
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 6.1e-34 147.5 167 52.1
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 6.1e-34 147.5 167 52.7
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 1.8e-33 146.0 167 52.1
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.0e-33 145.2 167 52.1
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 8.8e-33 143.7 167 50.3
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 1.1e-32 143.3 167 50.9
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 2.0e-32 142.5 167 51.5
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 3.3e-32 141.7 167 52.1
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 3.3e-32 141.7 167 51.5
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 5.7e-32 141.0 167 52.1
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 5.7e-32 141.0 167 52.1
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 5.7e-32 141.0 167 52.1
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 5.7e-32 141.0 167 52.1
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 5.7e-32 141.0 167 52.1
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 5.7e-32 141.0 167 52.1
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 7.4e-32 140.6 167 51.5
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 2.8e-31 138.7 167 50.3
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 2.8e-31 138.7 167 50.3
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 2.8e-31 138.7 167 50.3
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 3.7e-31 138.3 167 50.3
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 3.1e-30 135.2 167 52.7
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 6.9e-30 134.0 153 52.9
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 6.9e-30 134.0 153 52.9
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 7.7e-29 130.6 167 47.9
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.2e-27 125.2 147 52.4
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 6.1e-26 120.9 115 62.6
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.9e-25 118.2 165 47.9
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.9e-25 118.2 166 45.2
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 1.5e-24 116.3 144 50.7
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 3.3e-24 115.2 105 62.9
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.3e-24 115.2 150 48.7
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.3e-24 115.2 150 48.7
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 4.4e-24 114.8 105 66.7
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.4e-24 114.8 166 44.6
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 5.7e-24 114.4 167 44.9
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 9.7e-24 113.6 166 44.6
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.3e-23 113.2 167 44.3
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 1.7e-23 112.8 124 52.4
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.2e-23 112.5 112 57.1
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.2e-23 112.5 150 48.0
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 4.8e-23 111.3 152 46.7
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.7e-20 102.8 72 73.6
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 1.5e-19 99.8 69 73.9
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 4.2e-19 98.2 167 39.5
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 5.5e-19 97.8 137 45.3
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 4.7e-18 94.7 111 55.9
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 8.0e-18 94.0 72 70.8
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 1.4e-17 93.2 72 66.7
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 1.4e-17 93.2 72 66.7
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 4.0e-17 91.7 136 47.1
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 5.2e-17 91.3 166 42.8
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 1.8e-14 82.8 58 74.1
BolSC29t60589H Brassica oleracea HOM05D000806 ORTHO05D007429 5.3e-14 81.3 59 66.1
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 5.3e-14 81.3 41 95.1
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 5.3e-14 81.3 41 95.1
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 5.3e-14 81.3 41 95.1
MD15G1388400 Malus domestica HOM05D000806 ORTHO05D007429 1.2e-13 80.1 61 67.2
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 3.5e-13 78.6 41 92.7
BolC9t55821H Brassica oleracea HOM05D000806 ORTHO05D007429 4.5e-13 78.2 59 62.7
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.9e-13 77.8 41 85.4
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.9e-13 77.8 41 85.4
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 7.7e-13 77.4 41 87.8
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 7.7e-13 77.4 41 87.8
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 7.7e-13 77.4 127 42.5
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 7.7e-13 77.4 41 87.8
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 7.7e-13 77.4 41 87.8
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 7.7e-13 77.4 41 87.8
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 1.0e-12 77.0 41 87.8
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.0e-12 77.0 150 40.7
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.3e-12 76.6 41 87.8
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.3e-12 76.6 41 87.8
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 1.7e-12 76.3 41 85.4
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 3.8e-12 75.1 41 85.4
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 3.8e-12 75.1 40 85.0
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 3.8e-12 75.1 41 82.9
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 6.5e-12 74.3 41 85.4
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 6.5e-12 74.3 41 85.4
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 6.5e-12 74.3 41 85.4
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.9e-11 72.8 41 80.5
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 1.9e-11 72.8 41 80.5
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 1.9e-11 72.8 41 80.5
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 2.5e-11 72.4 41 78.0
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 2.5e-11 72.4 41 78.0
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 2.5e-11 72.4 41 82.9
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.2e-11 72.0 121 41.3
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.2e-11 72.0 111 45.0
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 3.2e-11 72.0 41 80.5
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 5.5e-11 71.2 41 78.0
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.5e-11 71.2 41 80.5
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 5.5e-11 71.2 41 80.5
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 7.2e-11 70.9 41 78.0
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 7.2e-11 70.9 41 75.6
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 7.2e-11 70.9 41 75.6
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 9.4e-11 70.5 41 75.6
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.2e-10 70.1 41 75.6
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.2e-10 70.1 41 75.6
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.2e-10 70.1 41 75.6
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.2e-10 70.1 41 75.6
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.2e-10 70.1 41 75.6
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 1.6e-10 69.7 41 80.5
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 2.7e-10 68.9 44 70.5
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.6e-10 68.6 125 40.0
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 3.6e-10 68.6 87 50.6
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 4.7e-10 68.2 42 76.2
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 4.7e-10 68.2 41 80.5
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 4.7e-10 68.2 33 93.9
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 6.1e-10 67.8 41 78.0
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 6.1e-10 67.8 41 78.0
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 6.1e-10 67.8 41 78.0
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.1e-10 67.8 41 75.6
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 1.4e-09 66.6 41 73.2
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 1.8e-09 66.2 45 75.6
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 2.3e-09 65.9 163 25.8
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 2.3e-09 65.9 43 72.1
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 4.0e-09 65.1 42 71.4
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 4.0e-09 65.1 41 70.7
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 4.0e-09 65.1 41 70.7
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 5.2e-09 64.7 37 75.7
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 6.8e-09 64.3 41 73.2
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 6.8e-09 64.3 37 81.1
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 1.2e-08 63.5 44 65.9
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.5e-08 63.2 38 71.1
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.5e-08 63.2 38 71.1
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 2.0e-08 62.8 38 76.3
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 9.8e-08 60.5 39 76.9
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 2.8e-07 58.9 41 68.3
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 2.8e-07 58.9 175 29.1
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.7e-07 58.5 41 65.9
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 3.7e-07 58.5 41 61.0
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 3.7e-07 58.5 41 61.0
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 3.7e-07 58.5 41 61.0
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 6.3e-07 57.8 34 70.6
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 6.3e-07 57.8 177 31.6
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 1.4e-06 56.6 40 67.5
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 2.4e-06 55.8 41 58.5
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 4.1e-06 55.1 64 53.1
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 7.0e-06 54.3 38 63.2


User provided reference genes

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