Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 9.8e-126 453.4 213 100.0
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 5.4e-108 394.4 191 96.3
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 5.4e-108 394.4 191 95.8
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 4.6e-91 338.2 194 84.5
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 1.5e-86 323.2 189 79.9
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 7.6e-86 320.9 196 81.1
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 5.8e-78 294.7 139 93.5
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.0e-74 283.9 156 77.6
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 8.7e-74 280.8 168 73.2
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 8.7e-74 280.8 160 73.8
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 3.3e-73 278.9 156 75.6
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 4.3e-73 278.5 153 79.1
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 5.7e-73 278.1 148 79.1
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 5.7e-73 278.1 179 68.2
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 9.7e-73 277.3 172 71.5
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 1.3e-72 276.9 159 75.5
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 1.6e-72 276.6 154 76.6
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 2.2e-72 276.2 151 80.1
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 2.2e-72 276.2 153 78.4
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 2.8e-72 275.8 159 75.5
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 2.8e-72 275.8 173 68.8
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 2.8e-72 275.8 157 73.9
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 3.7e-72 275.4 190 66.3
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 3.7e-72 275.4 153 75.8
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 6.3e-72 274.6 154 76.6
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 6.3e-72 274.6 162 74.1
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 1.1e-71 273.9 167 72.5
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.4e-71 273.5 162 73.5
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 2.4e-71 272.7 167 71.9
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 2.4e-71 272.7 173 70.5
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 2.4e-71 272.7 173 70.5
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 3.1e-71 272.3 175 69.1
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 5.3e-71 271.6 150 79.3
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 9.0e-71 270.8 174 69.0
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 9.0e-71 270.8 154 76.0
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 9.0e-71 270.8 155 74.8
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 2.0e-70 269.6 147 80.3
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 2.0e-70 269.6 200 62.5
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 2.6e-70 269.2 157 74.5
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 4.5e-70 268.5 151 76.2
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 1.0e-69 267.3 161 72.0
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 1.3e-69 266.9 163 72.4
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 1.3e-69 266.9 148 78.4
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 2.2e-69 266.2 154 74.7
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 2.9e-69 265.8 158 72.8
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 2.9e-69 265.8 150 75.3
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 2.9e-69 265.8 145 80.0
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 5.0e-69 265.0 170 69.4
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 6.5e-69 264.6 157 72.6
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 6.5e-69 264.6 161 70.2
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 8.5e-69 264.2 160 71.2
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 1.1e-68 263.8 154 74.7
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 1.1e-68 263.8 172 68.0
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 1.1e-68 263.8 172 68.0
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 1.1e-68 263.8 172 68.0
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 1.4e-68 263.5 179 68.2
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 1.9e-68 263.1 174 67.2
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.9e-68 263.1 170 69.4
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 3.2e-68 262.3 163 69.3
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 5.5e-68 261.5 170 68.8
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 5.5e-68 261.5 153 72.5
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 9.4e-68 260.8 152 73.0
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 1.6e-67 260.0 156 71.8
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 2.1e-67 259.6 156 71.8
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 7.9e-67 257.7 181 63.5
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 1.4e-66 256.9 174 64.9
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 3.9e-66 255.4 171 67.3
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 5.1e-66 255.0 151 72.8
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.5e-65 253.4 170 64.7
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 1.5e-65 253.4 174 64.4
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 1.5e-65 253.4 161 69.6
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 2.0e-65 253.1 169 65.7
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 2.5e-65 252.7 171 65.5
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 3.3e-65 252.3 170 64.7
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 4.3e-65 251.9 149 73.2
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 4.3e-65 251.9 181 62.4
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 5.7e-65 251.5 139 77.0
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 9.7e-65 250.8 149 69.1
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 1.7e-64 250.0 152 72.4
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 2.8e-64 249.2 170 64.7
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 6.3e-64 248.1 151 69.5
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 1.4e-63 246.9 150 71.3
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 3.1e-63 245.7 164 66.5
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 3.1e-63 245.7 158 66.5
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 6.9e-63 244.6 163 66.3
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 6.9e-63 244.6 143 70.6
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 1.5e-62 243.4 164 65.9
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 2.0e-62 243.0 164 67.7
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 3.4e-62 242.3 158 70.3
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 2.9e-61 239.2 132 75.0
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 8.5e-61 237.7 159 65.4
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 2.0e-49 199.9 104 83.7
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 4.8e-48 195.3 103 85.4
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 1.6e-46 190.3 159 52.2
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 3.8e-45 185.7 101 80.2
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 1.1e-44 184.1 176 54.5
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 7.5e-41 171.4 102 73.5
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 1.7e-40 170.2 171 42.7
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 1.6e-38 163.7 108 72.2
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.0e-38 163.3 105 68.6
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 2.7e-35 152.9 166 41.6
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 3.6e-35 152.5 103 65.0
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 3.0e-34 149.4 117 57.3
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 2.2e-32 143.3 93 63.4
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 1.4e-23 114.0 62 82.3
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 1.6e-22 110.5 79 58.2
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 5.2e-18 95.5 96 57.3
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 3.2e-15 86.3 55 60.0
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 4.7e-11 72.4 89 39.3
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 5.2e-10 68.9 80 41.2
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 8.9e-10 68.2 54 53.7
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 1.7e-08 63.9 46 67.4


User provided reference genes

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