Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 0.0e+00 1484.9 763 100.0
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 0.0e+00 1366.3 732 96.4
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 0.0e+00 1338.6 692 99.1
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 0.0e+00 1292.7 732 90.2
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 0.0e+00 1170.6 730 84.1
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 0.0e+00 1160.2 691 88.0
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.0e-285 985.7 691 78.1
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.0e-249 865.5 678 72.4
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 4.2e-243 845.1 681 65.6
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 3.5e-242 842.0 729 62.0
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 1.0e-241 840.5 710 62.8
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 2.1e-239 832.8 716 60.9
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 2.7e-234 815.8 740 58.8
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 5.6e-232 808.1 745 59.3
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 1.8e-230 803.1 729 58.0
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 7.1e-227 791.2 702 60.7
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 6.0e-226 788.1 708 59.0
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 1.0e-225 787.3 762 56.3
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 1.8e-225 786.6 708 58.6
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 2.1e-223 779.6 740 56.9
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 1.4e-222 776.9 740 56.8
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 2.0e-221 773.1 739 56.6
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 1.7e-220 770.0 673 59.4
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 2.9e-220 769.2 767 55.3
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 1.9e-219 766.5 737 55.8
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 3.2e-219 765.8 735 55.2
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 7.1e-219 764.6 733 56.2
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 2.1e-218 763.1 735 54.7
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 2.5e-216 756.1 740 56.6
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 9.0e-214 747.7 735 56.3
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 1.2e-210 737.3 600 64.8
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 1.0e-209 734.2 721 53.8
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 1.8e-209 733.4 655 58.8
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 3.0e-209 732.6 795 52.2
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 4.1e-206 722.2 883 47.6
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.2e-205 720.7 744 53.6
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 1.2e-205 720.7 733 53.8
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 6.5e-204 714.9 654 57.5
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 6.5e-204 714.9 723 53.4
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 9.4e-203 711.1 734 52.9
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 6.1e-202 708.4 723 53.0
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 8.8e-201 704.5 680 56.0
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 4.4e-200 702.2 695 53.5
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 2.8e-199 699.5 676 55.2
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 1.1e-198 697.6 680 54.7
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 1.2e-197 694.1 719 53.0
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.0e-197 693.3 755 51.7
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 2.0e-197 693.3 755 51.7
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 2.2e-196 689.9 739 52.4
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 2.9e-196 689.5 737 51.4
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 5.0e-196 688.7 736 51.4
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 6.5e-196 688.3 708 53.0
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 5.5e-195 685.3 721 52.8
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 7.2e-195 684.9 760 52.1
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 9.4e-195 684.5 751 50.5
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 1.6e-194 683.7 733 50.6
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 1.6e-194 683.7 689 53.1
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 2.1e-194 683.3 655 55.3
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 4.7e-194 682.2 721 52.3
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 8.0e-194 681.4 683 55.3
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 3.9e-193 679.1 738 51.2
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 5.2e-193 678.7 709 51.8
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 8.8e-193 677.9 718 51.1
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.5e-192 677.2 773 49.7
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 2.0e-192 676.8 660 53.5
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 1.7e-191 673.7 734 50.5
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 2.2e-191 673.3 664 54.5
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 2.8e-191 672.9 751 50.1
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 6.3e-191 671.8 662 53.0
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 1.8e-190 670.2 652 54.8
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 3.1e-190 669.5 737 50.1
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.1e-190 669.5 751 49.8
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 3.1e-190 669.5 711 51.6
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 4.5e-189 665.6 752 52.1
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 7.7e-189 664.8 731 51.6
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 2.9e-188 662.9 646 54.2
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 1.9e-187 660.2 737 49.3
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 1.9e-187 660.2 708 50.6
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 1.9e-187 660.2 740 49.6
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 2.5e-187 659.8 723 50.6
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 8.8e-185 651.4 684 51.2
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 2.0e-184 650.2 710 52.0
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 2.6e-184 649.8 661 52.2
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 3.4e-184 649.4 743 48.6
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 1.4e-182 644.0 1084 38.6
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 1.8e-182 643.7 714 50.4
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 7.0e-182 641.7 619 54.9
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 2.7e-181 639.8 715 50.2
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 3.5e-181 639.4 715 50.2
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 4.5e-181 639.0 711 50.2
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 7.7e-181 638.3 713 49.9
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 1.5e-179 634.0 632 52.5
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 1.8e-174 617.1 715 49.4
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 1.6e-173 614.0 701 54.2
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 2.7e-165 586.6 667 49.3
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 3.3e-163 579.7 611 51.4
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 4.7e-162 575.9 682 53.7
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 4.4e-160 569.3 600 51.7
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 1.4e-158 564.3 583 49.9
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 1.3e-151 541.2 699 44.1
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 3.9e-140 503.1 516 52.5
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 7.3e-131 472.2 738 41.6
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.5e-123 448.0 368 62.5
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 7.6e-104 382.5 377 53.1
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 6.1e-101 372.9 322 59.3
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 4.8e-98 363.2 598 35.3
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 2.9e-95 354.0 654 35.0
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 1.4e-94 351.7 658 34.7
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 3.1e-81 307.4 587 34.2
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 5.7e-75 286.6 170 88.8
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 8.2e-74 282.7 361 45.4
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 1.6e-69 268.5 235 60.0
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 8.0e-53 213.0 624 28.2
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 8.0e-53 213.0 261 45.2
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 6.4e-50 203.4 631 26.1
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 2.4e-41 174.9 673 23.9
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 3.6e-37 161.0 603 27.2
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 3.4e-27 127.9 151 49.7
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 9.9e-27 126.3 222 37.8
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 8.1e-21 106.7 144 45.8
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 2.0e-19 102.1 167 40.1
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 1.1e-17 96.3 124 47.6
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 4.6e-16 90.9 92 51.1
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 1.7e-15 89.0 159 39.6
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 3.9e-15 87.8 134 35.1
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 4.8e-13 80.9 74 54.1
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 5.8e-11 73.9 125 40.0
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 1.1e-09 69.7 90 48.9
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 2.1e-08 65.5 70 47.1
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-07 63.2 49 51.0


User provided reference genes

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