Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 0.0e+00 1206.4 595 100.0
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 0.0e+00 1140.6 566 99.3
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 0.0e+00 1139.8 564 99.5
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 0.0e+00 1094.7 566 94.9
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 0.0e+00 1092.8 566 94.5
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1090.1 561 94.7
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 0.0e+00 1089.3 558 95.3
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 563 94.0
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 566 93.8
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 566 93.5
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 0.0e+00 1086.6 567 94.0
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1086.2 566 93.3
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1085.5 561 93.9
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 0.0e+00 1084.7 563 94.1
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1083.6 563 94.0
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 0.0e+00 1082.8 563 93.4
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1082.8 564 93.6
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1082.0 562 93.8
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1081.6 564 93.8
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 0.0e+00 1081.6 563 93.6
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 563 93.1
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 563 94.0
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 561 93.4
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1080.5 564 93.6
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1080.5 564 93.8
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1079.7 561 93.6
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 566 92.8
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 565 93.3
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 563 93.8
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 567 92.6
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 566 92.6
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 564 93.6
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 561 93.6
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 564 93.3
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 566 92.8
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 561 93.0
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1075.1 562 93.1
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 4.1e-312 1074.7 567 92.2
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 4.1e-312 1074.7 564 93.3
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 4.1e-312 1074.3 562 92.7
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 4.1e-312 1074.3 561 93.4
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 4.1e-312 1073.9 566 92.2
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 4.1e-312 1073.9 566 92.2
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 4.1e-312 1073.9 567 92.2
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 4.1e-312 1073.5 566 92.0
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 8.1e-312 1073.2 560 93.4
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 8.1e-312 1073.2 564 92.2
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 1.2e-311 1072.4 566 91.9
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 1.2e-311 1072.4 566 91.9
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 1.2e-311 1072.4 564 92.4
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 1.2e-311 1072.4 559 93.4
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 1.6e-311 1072.0 563 92.7
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.6e-311 1072.0 562 92.9
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 2.0e-311 1071.6 563 92.5
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.0e-311 1071.6 566 92.6
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 2.8e-311 1071.2 563 92.4
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 3.7e-311 1070.8 563 92.7
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.7e-311 1070.8 563 93.1
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 4.9e-311 1070.5 566 92.9
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 4.9e-311 1070.5 563 92.5
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 6.1e-311 1070.1 567 92.2
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.8e-310 1068.5 562 92.3
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 1.8e-310 1068.5 558 93.2
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 2.4e-310 1068.1 566 91.5
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 2.4e-310 1068.1 566 91.5
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 5.3e-310 1067.0 562 92.5
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 5.3e-310 1067.0 568 91.7
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.8e-310 1066.6 564 92.7
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 4.4e-309 1063.9 566 91.7
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 4.4e-309 1063.9 566 91.7
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 7.6e-309 1063.1 581 89.8
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 1.3e-308 1062.4 566 91.5
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.3e-308 1062.4 596 88.6
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.7e-308 1062.0 560 91.2
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 1.7e-308 1062.0 561 91.3
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.2e-308 1061.6 566 91.3
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 1.1e-307 1059.3 563 92.0
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 1.9e-307 1058.5 523 98.7
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 1.9e-307 1058.5 568 91.0
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.6e-306 1055.4 616 85.4
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 3.5e-306 1054.3 568 91.0
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 6.0e-306 1053.5 554 92.1
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 6.0e-306 1053.5 568 90.8
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 7.8e-306 1053.1 553 92.8
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 2.3e-305 1051.6 598 87.1
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 3.0e-305 1051.2 593 88.4
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 4.9e-300 1033.9 575 89.2
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 9.3e-299 1029.6 554 88.4
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.6e-298 1028.9 561 89.7
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.8e-294 1015.4 557 87.1
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.8e-294 1015.4 557 87.1
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.0e-294 1014.2 555 87.7
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.0e-289 999.6 564 88.1
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 2.1e-287 991.9 539 87.4
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 9.0e-286 986.5 523 91.4
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 4.1e-278 961.1 489 94.3
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.9e-276 954.9 493 94.1
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 2.1e-266 922.2 566 82.2
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.0e-265 918.3 456 96.7
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 5.1e-265 917.5 540 80.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 2.6e-248 862.1 544 77.0
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.7e-242 841.3 563 76.7
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 7.7e-237 823.9 568 76.2
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.3e-236 823.2 420 96.0
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 7.2e-235 817.4 523 80.9
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 2.1e-234 815.8 408 96.1
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.8e-233 812.8 523 80.5
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 2.9e-228 795.4 528 77.5
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 5.6e-227 791.2 563 73.4
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 1.7e-223 779.6 566 72.3
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 4.1e-222 775.0 504 76.0
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 6.0e-221 771.2 562 72.8
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 6.8e-217 757.7 388 95.1
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.1e-209 733.8 566 67.3
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 4.3e-195 685.3 503 72.0
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.2e-189 667.2 331 96.1
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 7.4e-171 604.7 312 91.7
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 3.4e-160 569.3 508 62.0
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 3.2e-150 536.2 555 55.5
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 3.5e-144 516.2 262 93.9
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.5e-139 498.4 462 58.2
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.1e-137 494.6 564 53.2
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.2e-135 486.9 299 82.3
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 5.4e-129 465.7 505 54.1
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.9e-128 462.2 259 89.6
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.3e-127 461.1 293 79.5
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 6.5e-127 458.8 567 49.7
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-124 451.4 385 63.1
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.8e-122 443.4 499 50.1
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 3.7e-114 416.4 353 62.6
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 8.3e-114 415.2 238 88.7
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.8e-108 395.6 196 94.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-98 364.8 246 76.0
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.6e-96 356.3 267 68.5
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.0e-96 355.9 214 80.4
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.2e-92 342.8 167 97.6
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 7.6e-91 339.0 300 63.3
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.7e-90 337.8 183 85.8
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 7.3e-86 322.4 154 98.1
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-84 318.5 321 57.6
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.2e-83 315.1 160 92.5
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 4.9e-82 309.7 158 94.3
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.3e-69 268.5 175 80.0
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 1.1e-68 265.4 159 83.6
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.5e-64 250.4 152 83.6
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 6.3e-53 213.0 123 87.0
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 4.5e-51 206.8 133 78.2
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.3e-47 195.3 105 88.6
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.1e-44 185.7 138 68.8
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 4.1e-44 183.7 277 44.0
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 9.1e-44 182.6 113 81.4
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 4.2e-33 147.1 98 76.5
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 2.2e-29 134.8 73 95.9
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.6e-27 128.6 75 85.3
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 2.2e-26 124.8 144 50.7
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.7e-22 110.2 55 96.4
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 3.1e-20 104.4 86 67.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.5e-19 100.5 58 84.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.2e-16 92.4 53 84.9
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.6e-16 92.0 47 91.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-15 89.4 63 69.8
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 4.0e-15 87.4 88 60.2
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 3.4e-14 84.3 44 84.1
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 4.4e-14 84.0 49 81.6
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 4.4e-14 84.0 59 69.5
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 1.5e-09 68.9 60 65.0
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 2.1e-08 65.1 60 61.7


User provided reference genes

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