Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 0.0e+00 1854.0 937 100.0
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 0.0e+00 1813.9 937 97.9
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 0.0e+00 1639.8 935 88.4
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 0.0e+00 1562.7 949 84.0
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 0.0e+00 1513.4 957 81.1
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 0.0e+00 1444.9 945 79.2
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 0.0e+00 1090.5 952 61.0
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 4.9e-302 1041.2 941 58.7
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.1e-298 1030.0 958 57.4
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 1.9e-298 1029.2 955 58.0
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 2.8e-297 1025.4 955 57.8
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 3.7e-294 1015.0 951 56.5
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 3.7e-294 1015.0 947 56.5
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 4.9e-294 1014.6 953 57.0
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 6.0e-292 1007.7 952 56.8
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 1.7e-291 1006.1 962 56.3
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 2.3e-291 1005.7 950 56.9
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 2.3e-291 1005.7 958 56.7
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 6.6e-291 1004.2 967 56.6
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.2e-289 1000.0 952 56.2
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 3.6e-289 998.4 949 56.6
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 8.9e-288 993.8 937 57.0
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 1.2e-287 993.4 939 57.2
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 5.8e-287 991.1 939 57.0
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.4e-285 986.5 946 55.9
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 1.2e-284 983.4 956 56.4
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 6.0e-284 981.1 939 55.2
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.0e-283 980.3 950 56.6
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 2.3e-283 979.2 955 55.8
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 8.6e-283 977.2 923 57.9
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 1.5e-282 976.5 956 55.2
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.8e-281 972.2 955 55.3
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.1e-281 970.7 989 53.9
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 1.8e-280 969.5 941 56.9
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 2.0e-279 966.1 940 55.7
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 3.7e-278 961.8 964 54.5
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 4.1e-277 958.4 942 55.6
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 3.5e-276 955.3 939 56.9
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.5e-274 949.9 947 53.4
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 1.5e-271 939.9 943 53.3
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 4.9e-270 934.9 942 53.3
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 4.9e-270 934.9 942 53.0
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 2.1e-268 929.5 941 54.0
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 2.1e-268 929.5 874 59.2
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 4.6e-268 928.3 955 53.7
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 6.0e-268 927.9 950 53.9
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 1.0e-267 927.2 951 53.3
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.7e-267 926.4 1016 51.1
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 3.9e-267 925.2 942 53.9
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 5.6e-266 921.4 936 53.6
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.1e-264 917.1 947 52.5
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 3.1e-264 915.6 947 53.4
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 3.1e-264 915.6 945 53.3
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 9.9e-263 910.6 963 52.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.3e-262 910.2 941 52.6
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.4e-261 906.7 947 52.9
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 2.4e-261 906.0 938 53.2
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 5.4e-261 904.8 931 53.0
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 3.5e-260 902.1 945 53.1
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 4.6e-260 901.7 826 60.0
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 6.0e-260 901.4 941 52.9
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 1.0e-259 900.6 951 52.1
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 1.3e-259 900.2 934 52.0
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 2.1e-257 892.9 933 54.4
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 6.2e-257 891.3 938 51.6
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 1.1e-256 890.6 998 50.2
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.8e-251 873.2 921 53.7
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 6.2e-249 864.8 940 51.0
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 9.0e-248 860.9 958 49.5
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 3.8e-246 855.5 951 50.6
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 8.2e-233 811.2 969 47.8
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.3e-230 803.9 954 49.0
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 3.2e-229 799.3 811 55.0
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 2.7e-228 796.2 969 47.9
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.3e-227 793.1 945 47.4
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 4.1e-224 782.3 943 47.2
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 1.5e-223 780.4 970 47.8
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 1.0e-222 777.7 964 47.0
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 2.5e-221 773.1 800 54.9
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 2.7e-220 769.6 993 45.0
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 1.8e-219 766.9 954 45.9
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.5e-218 763.8 811 53.3
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 4.4e-218 762.3 876 49.3
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 3.2e-213 746.1 946 45.6
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 9.4e-213 744.6 966 46.1
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 1.0e-211 741.1 969 44.8
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 2.3e-211 740.0 967 46.0
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 7.4e-210 734.9 951 45.5
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 7.4e-210 734.9 971 45.8
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 2.8e-209 733.0 932 44.7
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 1.8e-208 730.3 957 45.0
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 3.7e-201 706.1 942 44.3
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 1.6e-196 690.6 881 45.4
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.0e-194 683.7 569 62.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.4e-194 682.9 569 62.0
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 9.8e-194 681.4 876 45.4
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.4e-192 676.8 852 46.8
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 6.1e-188 662.1 719 50.8
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-186 657.1 1034 41.1
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 1.7e-185 654.1 642 54.7
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 6.3e-185 652.1 725 49.4
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.5e-167 593.2 903 42.1
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 6.6e-166 589.0 657 49.0
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 4.3e-165 586.3 866 40.1
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 4.0e-163 579.7 860 42.7
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 5.8e-162 575.9 808 42.8
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.4e-152 544.7 754 43.6
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 8.7e-150 535.4 777 42.9
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 8.4e-145 518.8 937 37.1
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.1e-144 518.5 653 45.0
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 4.2e-144 516.5 652 44.6
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 5.5e-136 489.6 1031 34.3
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.1e-131 475.3 703 41.7
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 7.6e-130 469.2 699 42.5
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 2.9e-129 467.2 661 42.8
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 2.9e-129 467.2 661 42.8
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 1.8e-126 458.0 478 53.1
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.9e-126 456.8 583 44.8
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 8.4e-121 439.1 849 35.3
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 3.3e-117 427.2 358 61.2
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 4.3e-117 426.8 947 32.5
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.7e-117 426.4 525 45.5
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 1.3e-116 425.2 824 36.7
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.1e-99 369.0 586 39.6
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 5.9e-98 363.2 253 71.5
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.3e-92 345.5 561 38.9
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 1.6e-90 338.6 259 65.6
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 7.7e-90 336.3 593 36.8
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 1.3e-76 292.4 350 47.7
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 1.0e-73 282.7 355 46.8
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.0e-71 273.1 347 47.3
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.7e-68 265.4 1169 25.7
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 2.3e-65 255.0 558 34.8
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 4.9e-60 237.3 278 48.9
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.1e-59 236.1 263 45.2
Dinv16824 Davidia involucrata HOM05D010983 ORTHO05D005224 3.0e-57 228.0 150 72.7
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.1e-55 221.9 197 54.3
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 5.8e-53 213.8 205 52.7
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 5.2e-46 190.7 234 44.9
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 6.4e-44 183.7 105 94.3
BcaC09g51294 Brassica carinata HOM05D004256 ORTHO05D005224 1.6e-39 169.1 140 60.7
SEGI_28315 Sequoiadendron giganteum HOM05D004256 ORTHO05D005224 8.1e-39 166.8 151 56.3
CAN.G79.20 Capsicum annuum HOM05D004256 ORTHO05D005224 1.4e-38 166.0 115 67.8
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 8.9e-38 163.3 508 30.1
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 9.9e-37 159.8 306 34.0
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 8.7e-25 120.2 97 62.9
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 1.1e-24 119.8 142 48.6
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 5.6e-24 117.5 150 46.7
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 3.6e-23 114.8 81 70.4
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 3.1e-22 111.7 212 34.0
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 9.9e-21 106.7 92 56.5
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 8.4e-20 103.6 130 42.3
Cre03.g191200 Chlamydomonas reinhardtii HOM05D004256 ORTHO05D005224 1.4e-19 102.8 376 26.9
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 3.5e-18 98.2 219 30.6
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 6.7e-17 94.0 155 37.4
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.5e-16 92.0 78 60.3
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 4.8e-15 87.8 155 34.8
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 9.0e-14 83.6 106 43.4
SEGI_09964 Sequoiadendron giganteum HOM05D000070 ORTHO05D005224 7.6e-13 80.5 71 53.5
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 1.3e-12 79.7 134 35.1
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 6.5e-12 77.4 119 37.0
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 3.2e-11 75.1 95 42.1
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 3.2e-11 75.1 95 42.1
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 5.5e-11 74.3 91 42.9
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 9.3e-11 73.6 95 41.1
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 2.3e-09 68.9 81 45.7
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 5.7e-08 64.3 106 35.8
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 9.6e-08 63.5 232 26.3
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 2.8e-07 62.0 80 43.8
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 2.8e-07 62.0 80 43.8
C01p48000 Brassica napus HOM05D004256 ORTHO05D021760 5.3e-06 57.8 114 33.3
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 9.0e-06 57.0 159 29.6


User provided reference genes

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