Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 2.4e-38 162.2 112 100.0
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 2.5e-35 152.1 112 93.8
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 2.5e-35 152.1 112 93.8
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 2.1e-34 149.1 111 91.9
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 2.7e-34 148.7 112 77.7
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 3.0e-33 145.2 111 91.9
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 2.6e-32 142.1 112 82.1
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 7.4e-32 140.6 108 79.6
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 6.3e-31 137.5 108 66.7
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 8.2e-31 137.1 112 66.1
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 8.2e-31 137.1 112 68.8
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 6.9e-30 134.0 112 77.7
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 6.9e-30 134.0 112 80.4
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 6.9e-30 134.0 107 78.5
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 1.2e-29 133.3 112 64.3
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 1.2e-29 133.3 112 79.5
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 1.5e-29 132.9 112 72.3
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 3.4e-29 131.7 111 77.5
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 3.4e-29 131.7 112 77.7
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.9e-29 131.0 112 75.9
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 5.9e-29 131.0 112 76.8
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 7.7e-29 130.6 109 68.8
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 7.7e-29 130.6 112 80.4
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.0e-28 130.2 111 76.6
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 1.3e-28 129.8 111 81.1
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 1.7e-28 129.4 112 77.7
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 1.7e-28 129.4 113 70.8
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 1.7e-28 129.4 112 78.6
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.2e-28 129.0 112 74.1
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 2.2e-28 129.0 112 75.9
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 3.8e-28 128.3 112 77.7
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 6.5e-28 127.5 108 79.6
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 6.5e-28 127.5 112 68.8
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.1e-27 126.7 112 75.0
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 1.4e-27 126.3 114 76.3
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 1.9e-27 125.9 111 55.0
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 2.5e-27 125.6 113 77.0
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 2.5e-27 125.6 111 77.5
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 2.5e-27 125.6 110 76.4
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 2.5e-27 125.6 112 76.8
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 3.2e-27 125.2 110 62.7
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 3.2e-27 125.2 106 61.3
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 4.2e-27 124.8 111 73.0
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 4.2e-27 124.8 116 73.3
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 5.5e-27 124.4 111 73.0
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 7.2e-27 124.0 113 73.5
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 9.4e-27 123.6 109 76.1
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 9.4e-27 123.6 111 73.0
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 1.2e-26 123.2 111 80.2
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 1.2e-26 123.2 110 74.5
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 1.2e-26 123.2 110 74.5
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 1.6e-26 122.9 112 75.9
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 1.6e-26 122.9 110 73.6
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 1.6e-26 122.9 112 72.3
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 2.1e-26 122.5 112 76.8
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.1e-26 122.5 112 70.5
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 2.1e-26 122.5 112 74.1
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 2.1e-26 122.5 112 73.2
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 2.1e-26 122.5 112 57.1
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 3.6e-26 121.7 112 57.1
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 8.0e-26 120.6 110 76.4
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 8.0e-26 120.6 113 74.3
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 1.0e-25 120.2 114 75.4
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 1.0e-25 120.2 114 75.4
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 1.0e-25 120.2 112 67.9
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 2.3e-25 119.0 112 76.8
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 2.3e-25 119.0 111 56.8
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 2.3e-25 119.0 108 74.1
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 6.7e-25 117.5 112 70.5
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 8.8e-25 117.1 105 65.7
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 2.6e-24 115.5 109 73.4
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 9.7e-24 113.6 108 68.5
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 9.7e-24 113.6 108 50.9
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 2.8e-23 112.1 111 51.4
PGSC0003DMG401006926 Solanum tuberosum HOM05D005515 ORTHO05D006620 2.8e-23 112.1 86 95.3
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 3.7e-23 111.7 113 71.7
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 6.3e-23 110.9 115 67.0
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 4.1e-22 108.2 111 73.9
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.6e-21 106.3 108 52.8
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 2.6e-21 105.5 123 65.0
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 4.5e-21 104.8 110 70.9
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 1.3e-20 103.2 113 50.4
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 2.9e-20 102.1 115 59.1
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 5.0e-20 101.3 108 68.5
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 3.2e-19 98.6 109 68.8
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 7.2e-19 97.4 94 55.3
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 1.2e-18 96.7 112 48.2
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.6e-18 96.3 110 50.0
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 3.6e-18 95.1 116 67.2
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 3.6e-18 95.1 106 67.9
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 4.7e-18 94.7 47 100.0
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 1.0e-17 93.6 116 66.4
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 3.0e-17 92.0 108 59.3
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 6.7e-17 90.9 115 68.7
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 6.7e-17 90.9 113 42.5
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 6.7e-17 90.9 98 51.0
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 8.8e-17 90.5 88 76.1
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 3.3e-16 88.6 87 62.1
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 4.4e-16 88.2 114 65.8
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 4.4e-16 88.2 114 65.8
SGA_v2.0_scaffold154G37170 Striga asiatica HOM05D005515 ORTHO05D006620 4.4e-16 88.2 94 74.5
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 5.7e-16 87.8 82 73.2
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 9.7e-16 87.0 115 67.0
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 9.7e-16 87.0 87 75.9
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 1.3e-15 86.7 206 33.5
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 1.7e-15 86.3 111 65.8
Cpa.g.sc43.50 Carica papaya HOM05D005515 ORTHO05D006620 2.8e-15 85.5 88 75.0
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 6.3e-15 84.3 47 85.1
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 8.2e-15 84.0 83 66.3
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 8.2e-15 84.0 47 85.1
CDE02G3365 Ceratophyllum demersum HOM05D005515 ORTHO05D006620 1.1e-14 83.6 83 78.3
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.4e-14 83.2 43 90.7
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 1.8e-14 82.8 46 84.8
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 2.4e-14 82.4 106 47.2
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 4.1e-14 81.6 110 64.5
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 7.0e-14 80.9 108 51.9
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 7.0e-14 80.9 43 86.0
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 7.7e-13 77.4 47 74.5
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 2.2e-12 75.9 82 48.8
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 2.9e-12 75.5 111 63.1
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 3.8e-12 75.1 113 41.6
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 9.4e-11 70.5 73 50.7
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.0e-09 67.0 89 44.9
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 1.0e-09 67.0 84 41.7
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 1.4e-09 66.6 103 62.1
A06p41490 Brassica napus HOM05D005515 ORTHO05D006620 1.8e-09 66.2 116 52.6
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 2.3e-09 65.9 87 66.7
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 8.8e-09 63.9 88 38.6
BraA09t35966Z Brassica rapa HOM05D005515 ORTHO05D006620 7.5e-08 60.8 89 67.4
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 2.8e-07 58.9 82 59.8
Nn4g22340 Nelumbo nucifera HOM05D001716 ORTHO05D004234 4.1e-06 55.1 32 81.2


User provided reference genes

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