Gene: Nn4g22340
General Information
Structural Information
- Species Nelumbo nucifera
- Gene Identifier Nn4g22340
- Transcript Identifier Nn4g22340.1
- Gene Type Coding gene
- Location chr4 : 6070814-6095704 : negative
Gene Family Information
- ID HOM05D001716
- #Genes/#Species 378/97
- Phylogenetic origin
- ID ORTHO05D004234
- #Genes/#Species 186/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Nn4g22340.1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048507 | ISO | PLAZA Integrative Orthology | meristem development | AT5G22330 |
| GO:1900150 | ISO | PLAZA Integrative Orthology | regulation of defense response to fungus | AT5G22330 |
| GO:0045893 | IEA | InterPro | positive regulation of transcription, DNA-templated | |
| GO:0006406 | IEA | InterPro | mRNA export from nucleus |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G22330 |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003678 | IEA | InterPro | DNA helicase activity | |
| GO:0043139 | IEA | InterPro | 5'-3' DNA helicase activity | |
| GO:0003713 | IEA | InterPro | transcription coactivator activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G22330 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT5G22330 |
| GO:0031011 | ISO | PLAZA Homology (enrichment) | Ino80 complex | HOM05D001716 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G22330 |
| GO:0035267 | ISO | PLAZA Homology (enrichment) | NuA4 histone acetyltransferase complex | HOM05D001716 |
| GO:0097255 | ISO | PLAZA Homology (enrichment) | R2TP complex | HOM05D001716 |
| GO:0000124 | IEA | InterPro | SAGA complex | |
| GO:0005643 | IEA | InterPro | nuclear pore |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR018783 | Transcription factor, enhancer of yellow 2 |
| IPR041048 | RuvB-like, AAA-lid domain |
| IPR042487 | RuvBL1/2, DNA/RNA binding domain |
| IPR038212 | Transcription factor EnY2 superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR003593 | AAA+ ATPase domain |
| IPR027238 | RuvB-like |
| IPR010339 | TIP49, P-loop domain |
| Mapman id | Description |
|---|---|
| 12.3.1.1.4 | Chromatin organisation.post-translational histone modification.histone acetylation.NuA4 histone acetyltransferase complex.helicase component RVB |
| 12.4.4.5 | Chromatin organisation.nucleosome remodeling.SWR1 chromatin remodeling complex.helicase component RVB |
| 15.3.4.3.2.3 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.DUB histone deubiquitinating module.component SUS1/ENY2 |