Gene: AT3G27100

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G27100
  • Transcript Identifier AT3G27100.1
  • Gene Type Coding gene
  • Location Chr3 : 9994743-9995923 : negative

Gene Family Information

  • ID HOM05D005515
  • #Genes/#Species 139/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G27100.1
  • uniprot Q6NQ54

Descriptions

  • Description transcription/mRNA export factor
  • Computational description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 288 Blast hits to 288 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0045893
IEA
Gene Ontologypositive regulation of transcription, DNA-templated
GO:0045893
IEA
InterPropositive regulation of transcription, DNA-templated
GO:0006406
IEA
Gene OntologymRNA export from nucleus
GO:0006406
IEA
InterPromRNA export from nucleus
GO:0006357
IBA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0016578
IBA
IEA
GOA Databasehistone deubiquitination
GO:0016973
IBA
GOA Databasepoly(A)+ mRNA export from nucleus
GO:0015031
IEA
GOA Databaseprotein transport
GO:0051028
IEA
GOA DatabasemRNA transport
GO:0006325
IEA
GOA Databasechromatin organization
GO:0006368
IEA
GOA Databasetranscription elongation from RNA polymerase II promoter
GO:0035616
IMP
Gene Ontologyhistone H2B conserved C-terminal lysine deubiquitination1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003713
IBA
GOA Databasetranscription coactivator activity
GO:0003713
IEA
Gene Ontologytranscription coactivator activity
GO:0003713
IEA
InterProtranscription coactivator activity
GO:0003682
IBA
GOA Databasechromatin binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0005654
IDA
Gene Ontologynucleoplasm1
GO:0005643
IEA
Gene Ontologynuclear pore
GO:0005643
IEA
InterPronuclear pore
GO:0000124
IBA
GOA DatabaseSAGA complex
GO:0000124
IEA
Gene OntologySAGA complex
GO:0000124
IEA
InterProSAGA complex
GO:0071819
IBA
IEA
GOA DatabaseDUBm complex
GO:0071819
IPI
Gene OntologyDUBm complex1
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0070390
IEA
GOA Databasetranscription export complex 2
GO:0070461
IPI
Gene OntologySAGA-type complex1
GO:0009941
HDA
Gene Ontologychloroplast envelope2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018783 Transcription factor, enhancer of yellow 2
IPR038212 Transcription factor EnY2 superfamily
Mapman id Description
15.3.4.3.2.3 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.SAGA complex.DUB histone deubiquitinating module.component SUS1/ENY2