Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g067300.2 Solanum lycopersicum HOM05D003226 ORTHO05D011023 1.2e-22 109.0 54 100.0
Nitab4.5_0026203g0010 Nicotiana tabacum HOM05D003226 ORTHO05D005723 5.9e-11 70.1 43 79.1
SGA_v2.0_scaffold499G52482 Striga asiatica HOM05D003226 ORTHO05D005723 7.8e-11 69.7 43 79.1
Nitab4.5_0000274g0210 Nicotiana tabacum HOM05D003226 ORTHO05D005723 2.3e-10 68.2 42 78.6
Migut.H00924 Erythranthe guttata HOM05D003226 ORTHO05D005723 6.6e-10 66.6 42 76.2
Oeu035695.1 Olea europaea HOM05D003226 ORTHO05D005723 6.6e-10 66.6 42 76.2
SGA_v2.0_scaffold1G00329 Striga asiatica HOM05D003226 ORTHO05D005723 6.6e-10 66.6 43 76.7
CANSAT64G2675 Cannabis sativa HOM05D003226 ORTHO05D005723 8.6e-10 66.2 36 86.1
Manes.02G046500 Manihot esculenta HOM05D003226 ORTHO05D005723 8.6e-10 66.2 36 86.1
GSVIVG01011408001 Vitis vinifera HOM05D003226 ORTHO05D005723 8.6e-10 66.2 36 86.1
AUR62029891 Chenopodium quinoa HOM05D003226 ORTHO05D005723 1.1e-09 65.9 42 76.2
FvH4_2g39941 Fragaria vesca HOM05D003226 ORTHO05D005723 1.1e-09 65.9 43 72.1
FAN15G3277 Fragaria x ananassa HOM05D003226 ORTHO05D005723 1.1e-09 65.9 43 72.1
FAN20G3149 Fragaria x ananassa HOM05D003226 ORTHO05D005723 1.1e-09 65.9 43 72.1
CAN.G206.153 Capsicum annuum HOM05D003226 ORTHO05D005723 1.5e-09 65.5 42 76.2
AUR62034416 Chenopodium quinoa HOM05D003226 ORTHO05D005723 1.5e-09 65.5 42 76.2
Potri.017G083200 Populus trichocarpa HOM05D003226 ORTHO05D005723 1.9e-09 65.1 36 83.3
Sabra17G0073700 Salix brachista HOM05D003226 ORTHO05D005723 1.9e-09 65.1 36 83.3
CiPaw.03G026700 Carya illinoinensis HOM05D003226 ORTHO05D005723 2.5e-09 64.7 36 83.3
TAR381G0539 Trochodendron aralioides HOM05D003226 ORTHO05D005723 2.5e-09 64.7 36 83.3
unitig_899.g15524 Utricularia gibba HOM05D003226 ORTHO05D005723 2.5e-09 64.7 42 69.0
Cc07_g03380 Coffea canephora HOM05D003226 ORTHO05D005723 3.3e-09 64.3 36 83.3
Solyc02g087980.3 Solanum lycopersicum HOM05D003226 ORTHO05D005723 3.3e-09 64.3 36 83.3
Sopen02g032720 Solanum pennellii HOM05D003226 ORTHO05D005723 3.3e-09 64.3 36 83.3
PGSC0003DMG400001326 Solanum tuberosum HOM05D003226 ORTHO05D005723 3.3e-09 64.3 36 83.3
EL10Ac2g02987 Beta vulgaris HOM05D003226 ORTHO05D005723 4.3e-09 63.9 42 73.8
Lj7C393G0 Lonicera japonica HOM05D003226 ORTHO05D005723 4.3e-09 63.9 36 80.6
Prupe.3G267300 Prunus persica HOM05D003226 ORTHO05D005723 4.3e-09 63.9 36 80.6
ATR0605G313 Amborella trichopoda HOM05D003226 ORTHO05D005723 5.6e-09 63.5 44 72.7
Dinv33760 Davidia involucrata HOM05D003226 ORTHO05D005723 5.6e-09 63.5 36 80.6
MD02G1198100 Malus domestica HOM05D003226 ORTHO05D005723 5.6e-09 63.5 36 80.6
RcHm_v2.0_Chr6g0300801 Rosa chinensis HOM05D003226 ORTHO05D005723 5.6e-09 63.5 36 80.6
Sed0013037 Sechium edule HOM05D003226 ORTHO05D005723 5.6e-09 63.5 36 77.8
Sc14g0005870 Simmondsia chinensis HOM05D003226 ORTHO05D005723 5.6e-09 63.5 36 80.6
Actinidia06098 Actinidia chinensis HOM05D003226 ORTHO05D005723 7.3e-09 63.2 43 69.8
FvH4_5g30910 Fragaria vesca HOM05D003226 ORTHO05D005723 7.3e-09 63.2 36 80.6
FAN13G2771 Fragaria x ananassa HOM05D003226 ORTHO05D005723 7.3e-09 63.2 36 80.6
FAN18G4273 Fragaria x ananassa HOM05D003226 ORTHO05D005723 7.3e-09 63.2 36 80.6
Hund08915 Selenicereus undatus HOM05D003226 ORTHO05D005723 7.3e-09 63.2 35 82.9
MELO3C022910.2 Cucumis melo HOM05D003226 ORTHO05D005723 9.5e-09 62.8 36 80.6
SalBow1G4412 Salvia bowleyana HOM05D003226 ORTHO05D005723 9.5e-09 62.8 36 77.8
Eucgr.I01943 Eucalyptus grandis HOM05D003226 ORTHO05D005723 1.2e-08 62.4 36 80.6
Peaxi162Scf00011g02911 Petunia axillaris HOM05D003226 ORTHO05D005723 1.2e-08 62.4 36 77.8
Aqoxy5G00799 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 1.6e-08 62.0 37 78.4
Cfa007554 Carpinus fangiana HOM05D003226 ORTHO05D005723 1.6e-08 62.0 36 80.6
CDE04G2390 Ceratophyllum demersum HOM05D003226 ORTHO05D005723 1.6e-08 62.0 36 77.8
Glyma.13G062800 Glycine max HOM05D003226 ORTHO05D005723 1.6e-08 62.0 36 80.6
Glyma.19G022800 Glycine max HOM05D003226 ORTHO05D005723 1.6e-08 62.0 36 80.6
Phvul.004G029000 Phaseolus vulgaris HOM05D003226 ORTHO05D005723 1.6e-08 62.0 36 80.6
RcHm_v2.0_Chr7g0223741 Rosa chinensis HOM05D003226 ORTHO05D005723 1.6e-08 62.0 36 77.8
SHI25915 Sapria himalayana HOM05D003226 ORTHO05D005723 1.6e-08 62.0 36 77.8
VMungo0464G1600 Vigna mungo HOM05D003226 ORTHO05D005723 1.6e-08 62.0 36 80.6
Ciclev10010934m.g Citrus clementina HOM05D003226 ORTHO05D005723 2.1e-08 61.6 35 80.0
Ah.10g031620 Amaranthus hybridus HOM05D003226 ORTHO05D005723 2.8e-08 61.2 33 84.8
Lj4g0003862 Lotus japonicus HOM05D003226 ORTHO05D005723 2.8e-08 61.2 33 84.8
Lalb_Chr21g0318701 Lupinus albus HOM05D003226 ORTHO05D005723 2.8e-08 61.2 33 84.8
Medtr8g072890 Medicago truncatula HOM05D003226 ORTHO05D005723 2.8e-08 61.2 44 65.9
QL02p063973 Quercus lobata HOM05D003226 ORTHO05D005723 2.8e-08 61.2 33 84.8
TAR375G0513 Trochodendron aralioides HOM05D003226 ORTHO05D005723 2.8e-08 61.2 36 80.6
RcHm_v2.0_Chr7g0226461 Rosa chinensis HOM05D003226 ORTHO05D005723 3.6e-08 60.8 36 77.8
Aqoxy5G00921 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 4.7e-08 60.5 36 77.8
Ca_22432_v3 Cicer arietinum L. HOM05D003226 ORTHO05D005723 4.7e-08 60.5 43 67.4
ClCG11G000030 Citrullus lanatus HOM05D003226 ORTHO05D005723 4.7e-08 60.5 36 77.8
PSO170G5698 Papaver somniferum HOM05D003226 ORTHO05D005723 4.7e-08 60.5 43 67.4
PGR004G1048 Punica granatum HOM05D003226 ORTHO05D005723 4.7e-08 60.5 34 79.4
Atru.chr8.162 Acer truncatum HOM05D003226 ORTHO05D005723 6.1e-08 60.1 42 71.4
AL43U10030 Arabidopsis lyrata HOM05D003226 ORTHO05D011023 6.1e-08 60.1 38 73.7
COL.COLO4_33309 Corchorus olitorius HOM05D003226 ORTHO05D005723 6.1e-08 60.1 36 77.8
Duzib187G0629 Durio zibethinus HOM05D003226 ORTHO05D005723 6.1e-08 60.1 36 77.8
Gohir.D09G014800 Gossypium hirsutum HOM05D003226 ORTHO05D005723 6.1e-08 60.1 36 77.8
Gorai.006G016800 Gossypium raimondii HOM05D003226 ORTHO05D005723 6.1e-08 60.1 36 77.8
HanXRQChr15g0473961 Helianthus annuus HOM05D003226 ORTHO05D005723 6.1e-08 60.1 33 81.8
Rhsim10G0039000 Rhododendron simsii HOM05D003226 ORTHO05D005723 6.1e-08 60.1 36 75.0
Thecc.04G082300 Theobroma cacao HOM05D003226 ORTHO05D005723 6.1e-08 60.1 36 77.8
vmacro05694 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 6.1e-08 60.1 36 75.0
AL8G21600 Arabidopsis lyrata HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
AT5G48600 Arabidopsis thaliana HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
BcaC06g33656 Brassica carinata HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
A06p40240 Brassica napus HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
C07p37860 Brassica napus HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
BolC7t44308H Brassica oleracea HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
BraA06t26939Z Brassica rapa HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
Carub.0005s0749 Capsella rubella HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
Cpa.g.sc140.54 Carica papaya HOM05D003226 ORTHO05D005723 8.0e-08 59.7 35 74.3
CsaV3_5G027630 Cucumis sativus L. HOM05D003226 ORTHO05D005723 8.0e-08 59.7 43 67.4
Thhalv10003529m.g Eutrema salsugineum HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
PSO017G5293 Papaver somniferum HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
Psat4g106040 Pisum sativum HOM05D003226 ORTHO05D005723 8.0e-08 59.7 33 81.8
Rhsim07G0120700 Rhododendron simsii HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
Sp2g17560 Schrenkiella parvula HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
THA.LOC104805468 Tarenaya hassleriana HOM05D003226 ORTHO05D005723 8.0e-08 59.7 36 75.0
TPR.G36529 Trifolium pratense HOM05D003226 ORTHO05D005723 8.0e-08 59.7 33 81.8
Zm00001eb291710 Zea mays HOM05D003226 ORTHO05D005723 8.0e-08 59.7 33 78.8
Aa31LG2G4270 Aethionema arabicum HOM05D003226 ORTHO05D005723 1.4e-07 58.9 33 78.8
CSS0044326 Camellia sinensis var. sinensis HOM05D003226 ORTHO05D005723 1.4e-07 58.9 33 78.8
Aqoxy6G02361 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 1.8e-07 58.5 33 81.8
CARHR037400 Cardamine hirsuta HOM05D003226 ORTHO05D005723 1.8e-07 58.5 36 72.2
Medtr7g091420 Medicago truncatula HOM05D003226 ORTHO05D005723 1.8e-07 58.5 32 84.4
AUR62039793 Chenopodium quinoa HOM05D003226 ORTHO05D005723 2.3e-07 58.2 36 75.0
FAN27G0753 Fragaria x ananassa HOM05D003226 ORTHO05D011023 2.3e-07 58.2 36 80.6
Manes.11G018150 Manihot esculenta HOM05D003226 ORTHO05D011023 3.1e-07 57.8 34 76.5
MBI18_g02834_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D005723 4.0e-07 57.4 32 81.2
Haze_14528 Corylus avellana HOM05D003226 ORTHO05D005723 5.2e-07 57.0 38 76.3
ECA246G4217 Erigeron canadensis HOM05D003226 ORTHO05D005723 5.2e-07 57.0 37 70.3
Manes.07G039648 Manihot esculenta HOM05D003226 ORTHO05D011023 5.2e-07 57.0 34 73.5
SEGI_24334 Sequoiadendron giganteum HOM05D003226 ORTHO05D005723 6.8e-07 56.6 32 81.2
TWI34G0415 Tripterygium wilfordii HOM05D003226 ORTHO05D005723 6.8e-07 56.6 33 78.8
arahy.Tifrunner.gnm1.ann1.R713I2 Arachis hypogaea HOM05D003226 ORTHO05D005723 8.9e-07 56.2 33 78.8
Lsat_1_v5_gn_3_101601 Lactuca sativa HOM05D003226 ORTHO05D005723 8.9e-07 56.2 33 75.8
Mapoly0189s0011 Marchantia polymorpha HOM05D003226 ORTHO05D005723 2.0e-06 55.1 41 63.4
RcHm_v2.0_Chr5g0008461 Rosa chinensis HOM05D003226 ORTHO05D035631 2.0e-06 55.1 36 72.2
Dinv02782 Davidia involucrata HOM05D003226 ORTHO05D011023 2.6e-06 54.7 36 75.0
FvH4_4g18080 Fragaria vesca HOM05D003226 ORTHO05D005723 3.4e-06 54.3 36 72.2
MBI01_g32851_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011023 3.4e-06 54.3 35 74.3
FvH4_6g23280 Fragaria vesca HOM05D003226 ORTHO05D011648 7.5e-06 53.1 30 76.7
PGR044G0718 Punica granatum HOM05D003226 ORTHO05D011023 7.5e-06 53.1 36 72.2
Peaxi162Scf00129g00132 Petunia axillaris HOM05D003226 ORTHO05D005723 9.8e-06 52.8 30 73.3
PRCOL_00002234 Prasinoderma coloniale HOM05D003226 ORTHO05D005723 9.8e-06 52.8 45 60.0


User provided reference genes

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