Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g067290.3 Solanum lycopersicum HOM05D003226 ORTHO05D011648 2.2e-28 128.3 64 100.0
Glyma.09G098100 Glycine max HOM05D003226 ORTHO05D011023 1.2e-18 95.9 53 88.7
Peaxi162Scf00011g02911 Petunia axillaris HOM05D003226 ORTHO05D005723 3.6e-15 84.3 44 90.9
Cc07_g03380 Coffea canephora HOM05D003226 ORTHO05D005723 4.7e-15 84.0 44 90.9
Cfa007554 Carpinus fangiana HOM05D003226 ORTHO05D005723 1.0e-14 82.8 44 88.6
Haze_14528 Corylus avellana HOM05D003226 ORTHO05D005723 1.4e-14 82.4 44 88.6
Migut.H00924 Erythranthe guttata HOM05D003226 ORTHO05D005723 1.4e-14 82.4 44 88.6
Lj4g0003862 Lotus japonicus HOM05D003226 ORTHO05D005723 1.4e-14 82.4 44 88.6
Nitab4.5_0000274g0210 Nicotiana tabacum HOM05D003226 ORTHO05D005723 1.4e-14 82.4 44 88.6
SGA_v2.0_scaffold1G00329 Striga asiatica HOM05D003226 ORTHO05D005723 1.4e-14 82.4 44 88.6
Actinidia06098 Actinidia chinensis HOM05D003226 ORTHO05D005723 1.8e-14 82.0 44 88.6
Ah.10g031620 Amaranthus hybridus HOM05D003226 ORTHO05D005723 1.8e-14 82.0 44 86.4
arahy.Tifrunner.gnm1.ann1.R713I2 Arachis hypogaea HOM05D003226 ORTHO05D005723 1.8e-14 82.0 44 88.6
arahy.Tifrunner.gnm1.ann1.WKF5J8 Arachis hypogaea HOM05D003226 ORTHO05D005723 1.8e-14 82.0 44 88.6
Dinv33760 Davidia involucrata HOM05D003226 ORTHO05D005723 1.8e-14 82.0 44 88.6
PGR004G1048 Punica granatum HOM05D003226 ORTHO05D005723 1.8e-14 82.0 44 88.6
FvH4_2g39941 Fragaria vesca HOM05D003226 ORTHO05D005723 2.3e-14 81.6 44 86.4
Gohir.A09G016100 Gossypium hirsutum HOM05D003226 ORTHO05D005723 2.3e-14 81.6 44 88.6
Gohir.D09G014800 Gossypium hirsutum HOM05D003226 ORTHO05D005723 2.3e-14 81.6 44 88.6
Gorai.006G016800 Gossypium raimondii HOM05D003226 ORTHO05D005723 2.3e-14 81.6 44 88.6
RcHm_v2.0_Chr6g0300801 Rosa chinensis HOM05D003226 ORTHO05D005723 2.3e-14 81.6 44 86.4
Thecc.04G082300 Theobroma cacao HOM05D003226 ORTHO05D005723 2.3e-14 81.6 44 88.6
Glyma.13G062800 Glycine max HOM05D003226 ORTHO05D005723 3.1e-14 81.3 44 88.6
Glyma.19G022800 Glycine max HOM05D003226 ORTHO05D005723 3.1e-14 81.3 44 88.6
Lj7C393G0 Lonicera japonica HOM05D003226 ORTHO05D005723 3.1e-14 81.3 44 86.4
Psat4g106040 Pisum sativum HOM05D003226 ORTHO05D005723 3.1e-14 81.3 44 86.4
Sc14g0005870 Simmondsia chinensis HOM05D003226 ORTHO05D005723 3.1e-14 81.3 44 86.4
VMungo0464G1600 Vigna mungo HOM05D003226 ORTHO05D005723 3.1e-14 81.3 44 88.6
GSVIVG01011408001 Vitis vinifera HOM05D003226 ORTHO05D005723 3.1e-14 81.3 44 88.6
Medtr8g072890 Medicago truncatula HOM05D003226 ORTHO05D005723 4.0e-14 80.9 44 86.4
Nn4g25634 Nelumbo nucifera HOM05D003226 ORTHO05D005723 4.0e-14 80.9 44 86.4
Peaxi162Scf00129g00132 Petunia axillaris HOM05D003226 ORTHO05D005723 4.0e-14 80.9 44 86.4
Prupe.3G267300 Prunus persica HOM05D003226 ORTHO05D005723 4.0e-14 80.9 44 86.4
Hund08915 Selenicereus undatus HOM05D003226 ORTHO05D005723 4.0e-14 80.9 44 86.4
TPR.G36529 Trifolium pratense HOM05D003226 ORTHO05D005723 4.0e-14 80.9 44 86.4
Aqoxy5G00799 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
Aqoxy5G00921 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
CSS0044326 Camellia sinensis var. sinensis HOM05D003226 ORTHO05D005723 5.2e-14 80.5 42 90.5
CANSAT64G2675 Cannabis sativa HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
AUR62034416 Chenopodium quinoa HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
Duzib187G0629 Durio zibethinus HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
Oeu062107.2 Olea europaea HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
Phvul.004G029000 Phaseolus vulgaris HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
Potri.017G083200 Populus trichocarpa HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
Sabra17G0073700 Salix brachista HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
SHI25915 Sapria himalayana HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
SGA_v2.0_scaffold499G52482 Striga asiatica HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
TAR381G0539 Trochodendron aralioides HOM05D003226 ORTHO05D005723 5.2e-14 80.5 44 86.4
AUR62029891 Chenopodium quinoa HOM05D003226 ORTHO05D005723 6.8e-14 80.1 44 86.4
MD02G1198100 Malus domestica HOM05D003226 ORTHO05D005723 6.8e-14 80.1 44 86.4
TWI34G0415 Tripterygium wilfordii HOM05D003226 ORTHO05D005723 6.8e-14 80.1 44 86.4
CiPaw.03G026700 Carya illinoinensis HOM05D003226 ORTHO05D005723 8.9e-14 79.7 44 84.1
MBI18_g02834_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D005723 8.9e-14 79.7 44 84.1
PSO017G5293 Papaver somniferum HOM05D003226 ORTHO05D005723 8.9e-14 79.7 44 86.4
Rhsim10G0039000 Rhododendron simsii HOM05D003226 ORTHO05D005723 8.9e-14 79.7 44 86.4
TAR375G0513 Trochodendron aralioides HOM05D003226 ORTHO05D005723 8.9e-14 79.7 44 86.4
vmacro02215 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 8.9e-14 79.7 44 86.4
vmacro05694 Vaccinium macrocarpon HOM05D003226 ORTHO05D005723 8.9e-14 79.7 44 86.4
Zm00001eb291710 Zea mays HOM05D003226 ORTHO05D005723 8.9e-14 79.7 44 84.1
Eucgr.I01943 Eucalyptus grandis HOM05D003226 ORTHO05D005723 1.2e-13 79.3 44 84.1
FvH4_5g30910 Fragaria vesca HOM05D003226 ORTHO05D005723 1.2e-13 79.3 44 84.1
Oeu035695.1 Olea europaea HOM05D003226 ORTHO05D005723 1.2e-13 79.3 44 84.1
Rhsim07G0120700 Rhododendron simsii HOM05D003226 ORTHO05D005723 1.2e-13 79.3 44 86.4
Atru.chr8.162 Acer truncatum HOM05D003226 ORTHO05D005723 1.5e-13 79.0 44 84.1
ATR0605G313 Amborella trichopoda HOM05D003226 ORTHO05D005723 1.5e-13 79.0 44 84.1
CAN.G206.153 Capsicum annuum HOM05D003226 ORTHO05D005723 1.5e-13 79.0 44 84.1
FAN15G3277 Fragaria x ananassa HOM05D003226 ORTHO05D005723 1.5e-13 79.0 44 84.1
FAN20G3149 Fragaria x ananassa HOM05D003226 ORTHO05D005723 1.5e-13 79.0 44 84.1
Aa31LG2G4270 Aethionema arabicum HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
AL8G21600 Arabidopsis lyrata HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
AT5G48600 Arabidopsis thaliana HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
BcaC06g33656 Brassica carinata HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
A06p40240 Brassica napus HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
C07p37860 Brassica napus HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
BraA06t26939Z Brassica rapa HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
Carub.0005s0749 Capsella rubella HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
CARHR037400 Cardamine hirsuta HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
Ciclev10010934m.g Citrus clementina HOM05D003226 ORTHO05D005723 2.0e-13 78.6 44 84.1
COL.COLO4_33309 Corchorus olitorius HOM05D003226 ORTHO05D005723 2.0e-13 78.6 44 84.1
Thhalv10003529m.g Eutrema salsugineum HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
Manes.02G046500 Manihot esculenta HOM05D003226 ORTHO05D005723 2.0e-13 78.6 44 84.1
PSO170G5698 Papaver somniferum HOM05D003226 ORTHO05D005723 2.0e-13 78.6 44 84.1
Sp2g17560 Schrenkiella parvula HOM05D003226 ORTHO05D005723 2.0e-13 78.6 41 90.2
Solyc02g087980.3 Solanum lycopersicum HOM05D003226 ORTHO05D005723 3.4e-13 77.8 44 81.8
Sopen02g032720 Solanum pennellii HOM05D003226 ORTHO05D005723 3.4e-13 77.8 44 81.8
BolC7t44308H Brassica oleracea HOM05D003226 ORTHO05D005723 4.4e-13 77.4 39 92.3
Hma1.2p1_0409F.1_g146951 Hydrangea macrophylla HOM05D003226 ORTHO05D005723 4.4e-13 77.4 44 84.1
SEGI_24334 Sequoiadendron giganteum HOM05D003226 ORTHO05D005723 4.4e-13 77.4 44 79.5
PGSC0003DMG400001326 Solanum tuberosum HOM05D003226 ORTHO05D005723 4.4e-13 77.4 44 81.8
THA.LOC104805468 Tarenaya hassleriana HOM05D003226 ORTHO05D005723 4.4e-13 77.4 44 84.1
HPP92_015724 Vanilla planifolia HOM05D003226 ORTHO05D005723 4.4e-13 77.4 44 81.8
AagrBONN_evm.TU.Sc2ySwM_368.939 Anthoceros agrestis HOM05D003226 ORTHO05D005723 5.8e-13 77.0 44 79.5
EL10Ac2g02987 Beta vulgaris HOM05D003226 ORTHO05D005723 5.8e-13 77.0 44 84.1
Pp3c18_16050 Physcomitrium patens HOM05D003226 ORTHO05D005723 5.8e-13 77.0 44 81.8
AUR62039793 Chenopodium quinoa HOM05D003226 ORTHO05D005723 7.5e-13 76.6 44 84.1
Mapoly0189s0011 Marchantia polymorpha HOM05D003226 ORTHO05D005723 7.5e-13 76.6 44 81.8
Medtr7g091420 Medicago truncatula HOM05D003226 ORTHO05D005723 7.5e-13 76.6 44 81.8
CDE04G2390 Ceratophyllum demersum HOM05D003226 ORTHO05D005723 9.8e-13 76.3 44 79.5
Sed0013037 Sechium edule HOM05D003226 ORTHO05D005723 9.8e-13 76.3 44 84.1
ClCG11G000030 Citrullus lanatus HOM05D003226 ORTHO05D005723 1.3e-12 75.9 44 84.1
Lalb_Chr21g0318701 Lupinus albus HOM05D003226 ORTHO05D005723 1.3e-12 75.9 44 81.8
MELO3C022910.2 Cucumis melo HOM05D003226 ORTHO05D005723 1.7e-12 75.5 44 84.1
CsaV3_5G027630 Cucumis sativus L. HOM05D003226 ORTHO05D005723 1.7e-12 75.5 44 84.1
FvH4_6g23280 Fragaria vesca HOM05D003226 ORTHO05D011648 1.7e-12 75.5 46 76.1
FAN13G2771 Fragaria x ananassa HOM05D003226 ORTHO05D005723 1.7e-12 75.5 44 79.5
RcHm_v2.0_Chr7g0226461 Rosa chinensis HOM05D003226 ORTHO05D005723 1.7e-12 75.5 44 81.8
Aqoxy6G02361 Aquilegia oxysepala HOM05D003226 ORTHO05D005723 6.4e-12 73.6 44 79.5
DCAR_025375 Daucus carota HOM05D003226 ORTHO05D005723 6.4e-12 73.6 44 79.5
RcHm_v2.0_Chr7g0223681 Rosa chinensis HOM05D003226 ORTHO05D011648 6.4e-12 73.6 42 81.0
RcHm_v2.0_Chr7g0223741 Rosa chinensis HOM05D003226 ORTHO05D005723 6.4e-12 73.6 42 81.0
CBR_g17940 Chara braunii HOM05D003226 ORTHO05D005723 7.0e-11 70.1 44 72.7
QL02p063973 Quercus lobata HOM05D003226 ORTHO05D005723 7.0e-11 70.1 35 91.4
FAN18G4273 Fragaria x ananassa HOM05D003226 ORTHO05D005723 3.5e-10 67.8 44 77.3
ECA246G4217 Erigeron canadensis HOM05D003226 ORTHO05D005723 4.6e-10 67.4 34 91.2
HanXRQChr15g0473961 Helianthus annuus HOM05D003226 ORTHO05D005723 4.6e-10 67.4 34 91.2
Lsat_1_v5_gn_3_101601 Lactuca sativa HOM05D003226 ORTHO05D005723 4.6e-10 67.4 34 91.2
MCO09G434 Micromonas commoda HOM05D003226 ORTHO05D005723 7.8e-10 66.6 44 70.5
MBI08_g18897_MAGBIO Magnolia biondii HOM05D003226 ORTHO05D011648 3.0e-09 64.7 47 66.0
Cre12.g493400 Chlamydomonas reinhardtii HOM05D003226 ORTHO05D005723 9.5e-08 59.7 44 61.4


User provided reference genes

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