Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 0.0e+00 1567.0 793 100.0
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 0.0e+00 1530.8 793 98.2
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 0.0e+00 1146.7 799 75.1
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 0.0e+00 1122.5 796 75.6
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 0.0e+00 1091.6 823 70.4
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.2e-239 832.8 674 67.8
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 1.6e-197 693.7 719 53.0
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.0e-196 691.0 846 48.1
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 6.6e-191 671.8 814 49.5
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 8.6e-191 671.4 811 48.6
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 5.4e-185 652.1 815 47.1
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.9e-183 646.0 828 47.0
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 3.6e-181 639.4 821 47.5
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.3e-178 630.9 809 46.8
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 5.4e-177 625.5 822 46.6
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 1.6e-176 624.0 832 47.7
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 9.5e-174 614.8 812 45.8
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 8.3e-170 601.7 735 48.3
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 7.1e-169 598.6 820 45.0
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 1.6e-168 597.4 813 45.6
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 8.1e-165 585.1 836 44.6
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 3.4e-163 579.7 822 44.5
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 1.4e-161 574.3 814 44.7
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 1.2e-157 561.2 820 44.3
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 3.6e-157 559.7 879 42.0
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 3.6e-157 559.7 873 42.3
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.5e-155 554.3 886 42.7
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 2.6e-155 553.5 843 42.9
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 1.7e-154 550.8 819 42.7
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 2.2e-154 550.4 809 43.3
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 1.5e-150 537.7 831 41.9
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 2.5e-150 537.0 822 40.5
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 3.3e-150 536.6 842 40.9
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 4.3e-150 536.2 833 42.3
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 8.1e-149 531.9 840 41.9
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 3.1e-148 530.0 663 47.5
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 2.0e-147 527.3 837 41.5
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.0e-147 527.3 666 47.6
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.7e-146 524.2 839 41.2
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 2.9e-146 523.5 834 41.7
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 3.8e-146 523.1 836 41.0
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 2.4e-145 520.4 733 44.1
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.4e-145 520.4 814 41.0
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 2.4e-145 520.4 813 42.1
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 9.3e-145 518.5 867 39.4
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 2.1e-144 517.3 740 44.1
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 6.0e-144 515.8 819 41.6
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 1.3e-143 514.6 813 42.7
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 2.5e-142 510.4 820 41.6
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 1.6e-141 507.7 814 41.4
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 1.8e-140 504.2 560 50.5
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 3.1e-140 503.4 819 39.8
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 4.0e-140 503.1 811 41.8
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 4.0e-140 503.1 811 41.8
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 2.0e-139 500.7 913 39.1
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 5.8e-139 499.2 824 40.3
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 5.8e-139 499.2 836 40.3
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 7.6e-139 498.8 818 41.0
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 7.6e-139 498.8 839 41.2
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 7.6e-139 498.8 687 44.7
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 9.9e-139 498.4 826 40.3
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 1.3e-138 498.0 727 44.0
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.7e-138 497.7 928 38.6
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 2.2e-138 497.3 802 39.9
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.4e-137 494.6 809 40.5
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.9e-137 494.2 822 40.4
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 4.2e-137 493.0 844 40.8
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 5.4e-137 492.7 800 39.9
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 5.4e-137 492.7 842 40.3
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 7.1e-137 492.3 803 39.9
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 9.3e-137 491.9 829 39.8
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 2.1e-136 490.7 949 37.4
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.5e-136 490.0 433 63.0
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 2.3e-135 487.3 823 39.2
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 3.9e-135 486.5 770 41.6
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.1e-134 485.0 949 37.3
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 9.6e-134 481.9 685 42.9
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 1.6e-133 481.1 677 44.0
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 8.1e-133 478.8 771 41.0
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 1.8e-132 477.6 778 41.3
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 5.3e-132 476.1 863 38.8
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 9.0e-132 475.3 813 40.7
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 9.0e-132 475.3 783 41.1
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 1.5e-131 474.6 673 42.9
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 4.5e-131 473.0 881 37.7
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 5.8e-131 472.6 577 47.5
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 1.0e-130 471.9 793 38.3
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.6e-128 464.5 728 41.3
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 3.5e-128 463.4 659 43.7
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 7.4e-126 455.7 609 44.3
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 6.2e-125 452.6 926 37.0
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 8.2e-125 452.2 797 39.3
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 8.2e-125 452.2 832 38.1
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 2.4e-124 450.7 797 38.8
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 1.7e-122 444.5 677 41.5
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 3.2e-121 440.3 920 36.8
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 1.6e-120 438.0 599 44.4
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 3.9e-119 433.3 839 37.7
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 6.5e-114 416.0 793 37.3
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 1.9e-113 414.5 922 35.6
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.1e-110 405.2 710 39.6
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 2.2e-109 401.0 802 36.2
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 1.5e-107 394.8 744 37.4
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.9e-105 387.9 307 62.5
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 3.0e-103 380.6 664 41.9
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.2e-98 364.4 345 54.2
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 6.1e-96 356.3 812 35.0
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.8e-95 354.8 842 34.3
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 5.2e-95 353.2 300 58.3
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.7e-93 347.1 712 35.8
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 3.1e-92 344.0 294 59.5
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.8e-84 318.2 333 52.0
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 2.3e-63 248.1 700 31.1
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 2.6e-54 218.0 334 39.2
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 3.4e-54 217.6 237 54.4
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 8.3e-53 213.0 315 40.3
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 4.3e-49 200.7 172 59.3
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 6.6e-42 176.8 729 27.6
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.5e-41 175.6 490 31.6
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 4.0e-39 167.5 437 34.3
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.2e-38 166.0 437 34.1
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 1.3e-37 162.5 98 81.6
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 1.7e-37 162.2 610 27.9
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 2.4e-23 115.2 254 33.9
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 3.1e-23 114.8 279 30.8
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.8e-21 107.8 91 59.3
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 1.6e-08 65.9 151 37.1
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 2.8e-08 65.1 121 39.7
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 2.4e-07 62.0 276 28.3
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 6.9e-07 60.5 44 61.4


User provided reference genes

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