Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 1.7e-251 872.1 419 100.0
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 3.1e-208 728.4 419 86.9
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 8.3e-185 650.6 420 76.9
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.5e-183 645.2 420 76.2
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 7.7e-183 644.0 408 80.4
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 2.0e-175 619.4 399 77.9
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 6.0e-151 538.1 414 63.0
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 6.6e-150 534.6 426 62.7
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 5.2e-147 525.0 416 61.5
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 5.8e-146 521.5 416 61.8
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.3e-142 509.6 420 62.1
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 9.6e-141 504.2 420 59.8
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 8.1e-140 501.1 412 60.7
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 4.9e-137 491.9 414 58.5
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 4.2e-136 488.8 406 59.1
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 1.0e-134 484.2 492 52.6
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 4.8e-132 475.3 409 62.8
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 6.2e-132 474.9 416 54.8
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 1.8e-131 473.4 408 57.4
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 2.4e-131 473.0 407 56.8
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 4.0e-131 472.2 411 55.7
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 5.3e-131 471.9 414 54.8
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 6.9e-131 471.5 407 56.5
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.2e-130 470.7 407 57.2
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.6e-130 469.5 408 55.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.9e-129 466.1 406 56.2
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 3.8e-129 465.7 406 57.1
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 3.8e-129 465.7 409 56.7
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 4.9e-129 465.3 413 56.9
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 8.4e-129 464.5 415 54.5
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 8.4e-129 464.5 415 54.5
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 1.9e-128 463.4 407 57.0
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.9e-128 463.4 407 55.8
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 9.3e-128 461.1 410 55.6
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 9.3e-128 461.1 407 55.5
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 2.7e-127 459.5 539 47.3
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 6.0e-127 458.4 434 53.9
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 1.3e-126 457.2 407 56.0
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 2.3e-126 456.4 406 55.2
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.0e-126 456.1 407 55.3
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 3.9e-126 455.7 407 54.1
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 5.1e-126 455.3 413 57.1
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 5.1e-126 455.3 409 54.8
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.1e-125 454.1 408 56.1
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 1.5e-125 453.8 405 57.0
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 2.5e-125 453.0 405 56.8
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 3.3e-125 452.6 406 53.7
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 5.6e-125 451.8 407 54.1
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 5.6e-125 451.8 380 60.0
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 5.6e-125 451.8 404 56.9
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 7.4e-125 451.4 412 54.4
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 7.4e-125 451.4 411 55.2
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 9.6e-125 451.1 408 53.9
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.3e-124 450.7 413 54.5
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 1.6e-124 450.3 404 54.5
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.6e-124 450.3 410 54.1
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 6.2e-124 448.4 407 53.6
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 6.2e-124 448.4 406 53.9
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 8.1e-124 448.0 403 54.3
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 8.1e-124 448.0 420 54.3
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.1e-123 447.6 407 53.8
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.1e-123 447.6 405 54.3
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 2.4e-123 446.4 407 53.8
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 1.5e-122 443.7 401 54.4
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 5.8e-122 441.8 420 53.8
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 5.8e-122 441.8 407 54.3
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.4e-120 437.2 405 53.1
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 2.4e-120 436.4 403 53.8
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 2.7e-119 433.0 403 53.3
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 2.7e-119 433.0 403 53.3
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 3.5e-119 432.6 403 52.4
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 6.0e-119 431.8 403 52.4
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 6.0e-119 431.8 403 52.4
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 7.9e-119 431.4 403 53.3
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.0e-118 431.0 413 54.2
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 1.0e-118 431.0 417 52.8
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 3.0e-118 429.5 404 52.7
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 3.9e-118 429.1 403 52.4
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 3.9e-118 429.1 378 55.0
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 3.9e-118 429.1 408 55.4
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 5.1e-118 428.7 403 52.1
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 5.1e-118 428.7 403 52.9
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 6.7e-118 428.3 410 53.2
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 9.6e-117 424.5 402 55.2
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 1.3e-116 424.1 403 52.1
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 2.8e-116 422.9 407 54.8
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.1e-115 421.0 403 52.6
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.1e-115 421.0 406 52.7
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 1.4e-115 420.6 403 52.6
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 3.1e-115 419.5 404 52.0
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 6.9e-115 418.3 404 51.7
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 1.0e-113 414.5 403 51.9
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 2.4e-107 393.3 448 46.9
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 9.0e-107 391.3 359 54.0
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 5.9e-106 388.7 388 48.7
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 6.1e-103 378.6 407 48.6
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 7.9e-103 378.3 242 69.0
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 3.0e-102 376.3 254 66.1
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.1e-101 374.4 412 47.3
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.5e-101 374.0 414 47.3
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 6.3e-100 368.6 402 48.5
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.1e-99 367.9 248 69.4
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 3.1e-99 366.3 409 49.4
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.3e-97 360.9 410 43.9
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 4.7e-95 352.4 379 49.9
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 3.0e-94 349.7 403 45.4
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.6e-87 327.4 210 70.5
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 3.9e-86 322.8 184 76.6
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 8.8e-86 321.6 436 40.4
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.1e-83 314.7 343 48.7
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.2e-82 311.2 344 49.1
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 5.7e-77 292.4 154 82.5
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.1e-75 288.1 439 37.1
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 2.0e-74 283.9 404 38.1
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.4e-67 261.2 412 35.4
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 5.4e-67 259.2 407 37.8
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 8.6e-65 251.9 132 84.1
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 4.0e-62 243.0 130 78.5
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 2.0e-58 230.7 284 44.4
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 1.3e-49 201.4 153 60.8
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.3e-49 201.4 153 60.8
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 3.6e-39 166.8 126 54.8
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 4.0e-38 163.3 258 38.4
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 6.8e-38 162.5 258 38.4
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 2.2e-36 157.5 83 83.1
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 4.6e-34 149.8 255 36.9
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 2.5e-32 144.1 201 43.8
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.6e-31 141.4 75 82.7
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.1e-19 102.1 200 32.0
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.6e-18 98.2 177 35.6
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 5.1e-17 93.2 103 54.4
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.3e-15 88.6 90 52.2
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 9.9e-13 79.0 170 33.5


User provided reference genes

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