Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g032970.4 Solanum lycopersicum HOM05D000181 ORTHO05D007950 1.2e-129 466.5 230 100.0
Sopen02g011360 Solanum pennellii HOM05D000181 ORTHO05D007950 1.2e-129 466.5 230 100.0
CAN.G1284.1 Capsicum annuum HOM05D000181 ORTHO05D007950 7.6e-124 447.2 231 96.1
DCAR_030391 Daucus carota HOM05D000181 ORTHO05D007950 6.3e-102 374.4 230 80.4
Dinv11715 Davidia involucrata HOM05D000181 ORTHO05D007950 1.2e-100 370.2 230 78.7
CSS0011745 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D007950 2.1e-97 359.4 230 77.0
TAR362G0160 Trochodendron aralioides HOM05D000181 ORTHO05D007950 1.8e-96 356.3 228 77.2
Nitab4.5_0000501g0090 Nicotiana tabacum HOM05D000181 ORTHO05D007950 4.4e-95 351.7 181 94.5
Cfa006380 Carpinus fangiana HOM05D000181 ORTHO05D007950 2.8e-94 349.0 228 75.4
Migut.E00692 Erythranthe guttata HOM05D000181 ORTHO05D007950 6.3e-94 347.8 231 74.0
Nitab4.5_0002192g0060 Nicotiana tabacum HOM05D000181 ORTHO05D007950 1.4e-93 346.7 181 93.4
GSVIVG01021791001 Vitis vinifera HOM05D000181 ORTHO05D007950 1.8e-93 346.3 231 73.2
MSTRG.2063 Avicennia marina HOM05D000181 ORTHO05D007950 3.1e-93 345.5 231 74.5
Nn4g25637 Nelumbo nucifera HOM05D000181 ORTHO05D007950 9.1e-93 344.0 230 73.0
Thecc.05G267400 Theobroma cacao HOM05D000181 ORTHO05D007950 1.2e-92 343.6 229 75.1
AUR62000630 Chenopodium quinoa HOM05D000181 ORTHO05D007950 1.5e-92 343.2 231 73.2
SalBow6G6839 Salvia bowleyana HOM05D000181 ORTHO05D007950 1.5e-92 343.2 223 75.8
AUR62006983 Chenopodium quinoa HOM05D000181 ORTHO05D007950 2.6e-92 342.4 231 73.6
Ciclev10030569m.g Citrus clementina HOM05D000181 ORTHO05D007950 2.6e-92 342.4 231 74.0
ECA246G2912 Erigeron canadensis HOM05D000181 ORTHO05D007950 4.5e-92 341.7 230 73.0
HanXRQChr15g0472161 Helianthus annuus HOM05D000181 ORTHO05D007950 5.9e-92 341.3 230 74.8
Gohir.A11G245300 Gossypium hirsutum HOM05D000181 ORTHO05D007950 1.0e-91 340.5 229 74.2
Peaxi162Scf00363g00728 Petunia axillaris HOM05D000181 ORTHO05D007950 1.3e-91 340.1 180 92.2
EL10Ac4g09755 Beta vulgaris HOM05D000181 ORTHO05D007950 5.0e-91 338.2 231 71.4
CANSAT54G2074 Cannabis sativa HOM05D000181 ORTHO05D007950 5.0e-91 338.2 222 73.9
Gohir.D11G255200 Gossypium hirsutum HOM05D000181 ORTHO05D007950 5.0e-91 338.2 229 73.4
Gorai.007G273800 Gossypium raimondii HOM05D000181 ORTHO05D007950 5.0e-91 338.2 229 73.4
Lsat_1_v5_gn_3_35721 Lactuca sativa HOM05D000181 ORTHO05D007950 5.0e-91 338.2 230 73.5
Manes.08G141200 Manihot esculenta HOM05D000181 ORTHO05D007950 6.5e-91 337.8 231 74.0
Actinidia04309 Actinidia chinensis HOM05D000181 ORTHO05D007950 8.5e-91 337.4 231 74.0
Atru.chr2.1070 Acer truncatum HOM05D000181 ORTHO05D007950 4.2e-90 335.1 231 74.5
TWI34G0190 Tripterygium wilfordii HOM05D000181 ORTHO05D007950 4.2e-90 335.1 226 74.3
Potri.013G048700 Populus trichocarpa HOM05D000181 ORTHO05D007950 7.2e-90 334.3 220 75.0
Prupe.6G352000 Prunus persica HOM05D000181 ORTHO05D007950 3.6e-89 332.0 229 69.9
Eucgr.H04217 Eucalyptus grandis HOM05D000181 ORTHO05D007950 4.7e-89 331.6 229 73.4
FvH4_6g01550 Fragaria vesca HOM05D000181 ORTHO05D007950 4.7e-89 331.6 226 71.2
FAN14G4262 Fragaria x ananassa HOM05D000181 ORTHO05D007950 4.7e-89 331.6 226 71.2
RcHm_v2.0_Chr3g0449311 Rosa chinensis HOM05D000181 ORTHO05D007950 4.7e-89 331.6 226 71.2
Sabra13G0044800 Salix brachista HOM05D000181 ORTHO05D007950 4.7e-89 331.6 220 74.1
CiPaw.07G071100 Carya illinoinensis HOM05D000181 ORTHO05D007950 6.1e-89 331.3 228 70.2
Thhalv10019907m.g Eutrema salsugineum HOM05D000181 ORTHO05D007950 6.1e-89 331.3 223 71.3
FAN09G4093 Fragaria x ananassa HOM05D000181 ORTHO05D007950 1.8e-88 329.7 226 70.8
Lj5g0022962 Lotus japonicus HOM05D000181 ORTHO05D007950 3.0e-88 328.9 221 73.8
MD04G1232400 Malus domestica HOM05D000181 ORTHO05D007950 3.0e-88 328.9 230 70.9
Aa31LG5G14810 Aethionema arabicum HOM05D000181 ORTHO05D007950 5.2e-88 328.2 227 70.0
BcaC05g29949 Brassica carinata HOM05D000181 ORTHO05D007950 6.7e-88 327.8 223 70.0
Sc16g0009800 Simmondsia chinensis HOM05D000181 ORTHO05D007950 6.7e-88 327.8 218 72.9
THA.LOC104827282 Tarenaya hassleriana HOM05D000181 ORTHO05D007950 8.8e-88 327.4 214 74.3
Sp3g03230 Schrenkiella parvula HOM05D000181 ORTHO05D007950 1.5e-87 326.6 214 73.4
FAN14G0398 Fragaria x ananassa HOM05D000181 ORTHO05D007950 2.0e-87 326.2 235 68.9
Sed0008679 Sechium edule HOM05D000181 ORTHO05D007950 2.0e-87 326.2 231 71.4
PGR004G1120 Punica granatum HOM05D000181 ORTHO05D007950 2.6e-87 325.9 231 71.9
ClCG03G010040 Citrullus lanatus HOM05D000181 ORTHO05D007950 3.3e-87 325.5 215 74.4
Ca_10026_v3 Cicer arietinum L. HOM05D000181 ORTHO05D007950 7.4e-87 324.3 227 70.5
MELO3C010145.2 Cucumis melo HOM05D000181 ORTHO05D007950 9.7e-87 323.9 220 72.7
BolC5t34940H Brassica oleracea HOM05D000181 ORTHO05D007950 2.2e-86 322.8 214 72.4
CARHR078520 Cardamine hirsuta HOM05D000181 ORTHO05D007950 2.8e-86 322.4 214 72.4
PSO210G0470 Papaver somniferum HOM05D000181 ORTHO05D007950 2.8e-86 322.4 227 68.3
A05p43110 Brassica napus HOM05D000181 ORTHO05D007950 3.7e-86 322.0 207 74.4
BraA05t23054Z Brassica rapa HOM05D000181 ORTHO05D007950 3.7e-86 322.0 207 74.4
Aqoxy2G02791 Aquilegia oxysepala HOM05D000181 ORTHO05D007950 4.8e-86 321.6 228 68.0
C05p62850 Brassica napus HOM05D000181 ORTHO05D007950 8.2e-86 320.9 207 73.9
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 8.2e-86 320.9 208 73.1
Glyma.20G227000 Glycine max HOM05D000181 ORTHO05D007950 1.1e-85 320.5 228 70.6
arahy.Tifrunner.gnm1.ann1.F17Y7U Arachis hypogaea HOM05D000181 ORTHO05D007950 2.4e-85 319.3 220 73.2
CsaV3_1G045170 Cucumis sativus L. HOM05D000181 ORTHO05D007950 2.4e-85 319.3 215 73.0
Lalb_Chr06g0168211 Lupinus albus HOM05D000181 ORTHO05D007950 2.4e-85 319.3 222 69.8
PSO761G0660 Papaver somniferum HOM05D000181 ORTHO05D007950 2.4e-85 319.3 227 67.8
Phvul.L002051 Phaseolus vulgaris HOM05D000181 ORTHO05D007950 5.3e-85 318.2 222 71.2
Medtr1g080430 Medicago truncatula HOM05D000181 ORTHO05D007950 7.0e-85 317.8 227 69.2
MBI19_g37398_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D007950 9.1e-85 317.4 230 70.4
VMungo0720G1286 Vigna mungo HOM05D000181 ORTHO05D007950 9.1e-85 317.4 227 70.0
AT3G04340 Arabidopsis thaliana HOM05D000181 ORTHO05D007950 2.6e-84 315.8 214 71.0
arahy.Tifrunner.gnm1.ann1.F7IFNT Arachis hypogaea HOM05D000181 ORTHO05D007950 2.6e-84 315.8 220 72.3
TPR.G26633 Trifolium pratense HOM05D000181 ORTHO05D007950 2.6e-84 315.8 227 69.6
Carub.0003s0355 Capsella rubella HOM05D000181 ORTHO05D007950 4.5e-84 315.1 214 71.0
Duzib177G0506 Durio zibethinus HOM05D000181 ORTHO05D007950 5.9e-84 314.7 201 76.1
AL3G14330 Arabidopsis lyrata HOM05D000181 ORTHO05D007950 1.3e-83 313.5 214 70.6
BcaC05g30203 Brassica carinata HOM05D000181 ORTHO05D007950 1.4e-80 303.5 192 74.5
Lj6A720T61 Lonicera japonica HOM05D000181 ORTHO05D007950 3.0e-80 302.4 216 68.5
ATR0064G121 Amborella trichopoda HOM05D000181 ORTHO05D007950 3.7e-78 295.4 202 71.3
SGA_v2.0_scaffold8G04660 Striga asiatica HOM05D000181 ORTHO05D007950 6.3e-78 294.7 224 65.6
CDE12G0221 Ceratophyllum demersum HOM05D000181 ORTHO05D007950 2.4e-77 292.7 206 68.9
Glyma.10G164800 Glycine max HOM05D000181 ORTHO05D007950 5.2e-64 248.4 145 80.0
Thhalv10022255m.g Eutrema salsugineum HOM05D000181 ORTHO05D007950 1.7e-62 243.4 214 61.7
Psat6g144520 Pisum sativum HOM05D000181 ORTHO05D007950 2.4e-61 239.6 190 64.2
AagrBONN_evm.TU.Sc2ySwM_368.2554 Anthoceros agrestis HOM05D000181 ORTHO05D007950 4.3e-58 228.8 200 53.0
FAN02G1064 Fragaria x ananassa HOM05D000181 ORTHO05D007950 2.0e-55 219.9 226 53.1
Mapoly0016s0072 Marchantia polymorpha HOM05D000181 ORTHO05D007950 4.9e-54 215.3 200 53.0
Pp3c3_13130 Physcomitrium patens HOM05D000181 ORTHO05D007950 1.2e-52 210.7 200 51.0
Pp3c13_19380 Physcomitrium patens HOM05D000181 ORTHO05D007950 6.0e-52 208.4 200 50.0
Haze_04399 Corylus avellana HOM05D000181 ORTHO05D007950 9.5e-50 201.1 260 45.4
Hma1.2p1_1351F.1_g277420 Hydrangea macrophylla HOM05D000181 ORTHO05D007950 4.3e-42 175.6 114 74.6
Cpa.g.sc51.9 Carica papaya HOM05D000181 ORTHO05D007950 1.2e-36 157.5 128 64.8
SMO119G0201 Selaginella moellendorffii HOM05D000181 ORTHO05D007950 1.3e-30 137.5 119 48.7
Thhalv10022034m.g Eutrema salsugineum HOM05D000181 ORTHO05D007950 2.4e-24 116.7 94 61.7
Lsat_1_v5_gn_8_151700 Lactuca sativa HOM05D000181 ORTHO05D007950 6.6e-19 98.6 69 72.5
Hma1.2p1_1351F.1_g277410 Hydrangea macrophylla HOM05D000181 ORTHO05D007950 2.2e-14 83.6 37 94.6
CBR_g17930 Chara braunii HOM05D000181 ORTHO05D007950 8.4e-14 81.6 203 28.1
SalBow8G5022 Salvia bowleyana HOM05D012573 ORTHO05D007950 8.4e-14 81.6 37 94.6
RcHm_v2.0_Chr4g0396731 Rosa chinensis HOM05D000181 ORTHO05D007950 1.9e-13 80.5 55 70.9
Psat6g144480 Pisum sativum HOM05D000181 ORTHO05D007950 1.6e-12 77.4 37 89.2
MCO10G216 Micromonas commoda HOM05D000181 ORTHO05D006419 8.1e-09 65.1 185 27.0
PRCOL_00005552 Prasinoderma coloniale HOM05D000181 ORTHO05D004115 1.1e-08 64.7 130 33.1
Aqoxy5G04193 Aquilegia oxysepala HOM05D000181 ORTHO05D006133 6.9e-08 62.0 130 33.1
Cre12.g485800 Chlamydomonas reinhardtii HOM05D000181 ORTHO05D006419 1.5e-07 60.8 185 24.9
VMungo0647G1346 Vigna mungo HOM05D000181 ORTHO05D004115 2.0e-07 60.5 179 27.9
vmacro06562 Vaccinium macrocarpon HOM05D000181 ORTHO05D006133 2.6e-07 60.1 131 32.8
C09p42970 Brassica napus HOM05D000974 ORTHO05D006133 4.5e-07 59.3 133 32.3
Rhsim03G0200000 Rhododendron simsii HOM05D000181 ORTHO05D006133 4.5e-07 59.3 131 32.8
unitig_0.g326 Utricularia gibba HOM05D000181 ORTHO05D006133 4.5e-07 59.3 215 26.0
Lj3A909G43 Lonicera japonica HOM05D000181 ORTHO05D006133 5.8e-07 58.9 140 30.7
Sp6g15350 Schrenkiella parvula HOM05D000181 ORTHO05D006133 5.8e-07 58.9 133 31.6
Cre13.g568400 Chlamydomonas reinhardtii HOM05D000181 ORTHO05D004115 7.6e-07 58.5 170 25.9
FvH4_5g23210 Fragaria vesca HOM05D000181 ORTHO05D006133 7.6e-07 58.5 188 27.1
FAN18G1629 Fragaria x ananassa HOM05D000181 ORTHO05D006133 7.6e-07 58.5 188 27.1
FAN18G4301 Fragaria x ananassa HOM05D000181 ORTHO05D006133 7.6e-07 58.5 188 27.1
BcaB08g35680 Brassica carinata HOM05D000974 ORTHO05D006133 1.0e-06 58.2 133 31.6
BcaC04g20491 Brassica carinata HOM05D000181 ORTHO05D006133 1.0e-06 58.2 136 30.9
BolC9t57166H Brassica oleracea HOM05D000974 ORTHO05D006133 1.0e-06 58.2 136 30.9
Hund11681 Selenicereus undatus HOM05D000181 ORTHO05D006133 1.3e-06 57.8 130 30.0
Thecc.03G193900 Theobroma cacao HOM05D000181 ORTHO05D006133 1.3e-06 57.8 187 26.7
EL10Ac3g05340 Beta vulgaris HOM05D000181 ORTHO05D006133 1.7e-06 57.4 130 31.5
Actinidia08631 Actinidia chinensis HOM05D000181 ORTHO05D006133 2.2e-06 57.0 130 30.8
BcaC03g14448 Brassica carinata HOM05D000181 ORTHO05D006133 2.2e-06 57.0 143 30.8
Carub.0008s1337 Capsella rubella HOM05D000181 ORTHO05D006133 2.2e-06 57.0 133 31.6
Gorai.012G053900 Gossypium raimondii HOM05D000181 ORTHO05D002783 2.2e-06 57.0 198 26.3
Lalb_Chr24g0399691 Lupinus albus HOM05D000181 ORTHO05D004115 2.2e-06 57.0 131 31.3
CAN.G108.33 Capsicum annuum HOM05D000181 ORTHO05D006133 2.9e-06 56.6 130 32.3
Thhalv10012717m.g Eutrema salsugineum HOM05D000181 ORTHO05D006133 2.9e-06 56.6 131 29.8
Actinidia34203 Actinidia chinensis HOM05D000181 ORTHO05D006133 3.8e-06 56.2 130 30.8
Cre17.g720050 Chlamydomonas reinhardtii HOM05D000181 ORTHO05D002783 3.8e-06 56.2 195 25.1
COL.COLO4_04929 Corchorus olitorius HOM05D000181 ORTHO05D002783 3.8e-06 56.2 198 26.8
Phvul.001G036400 Phaseolus vulgaris HOM05D000181 ORTHO05D004115 3.8e-06 56.2 132 31.1
Atru.chr1.243 Acer truncatum HOM05D000181 ORTHO05D006133 4.9e-06 55.8 130 30.8
A10p10680 Brassica napus HOM05D000181 ORTHO05D006133 4.9e-06 55.8 133 30.8
BraA10t43149Z Brassica rapa HOM05D000181 ORTHO05D006133 4.9e-06 55.8 133 30.8
AUR62006144 Chenopodium quinoa HOM05D000181 ORTHO05D006133 4.9e-06 55.8 130 31.5
Peaxi162Scf00904g00110 Petunia axillaris HOM05D000181 ORTHO05D006133 4.9e-06 55.8 130 30.8
TAR629G2510 Trochodendron aralioides HOM05D000181 ORTHO05D006133 4.9e-06 55.8 130 31.5
Aa31LG3G9310 Aethionema arabicum HOM05D000181 ORTHO05D006133 6.4e-06 55.5 162 28.4
Cpa.g.sc3.58 Carica papaya HOM05D000181 ORTHO05D006133 6.4e-06 55.5 167 28.1
FAN13G2920 Fragaria x ananassa HOM05D000181 ORTHO05D006133 6.4e-06 55.5 188 26.6
Prupe.5G026500 Prunus persica HOM05D000181 ORTHO05D006133 6.4e-06 55.5 130 31.5
Sabra15G0015700 Salix brachista HOM05D000181 ORTHO05D006133 6.4e-06 55.5 130 30.8
arahy.Tifrunner.gnm1.ann1.47L445 Arachis hypogaea HOM05D000181 ORTHO05D004115 8.4e-06 55.1 129 27.1
arahy.Tifrunner.gnm1.ann1.V8EHWM Arachis hypogaea HOM05D000181 ORTHO05D004115 8.4e-06 55.1 129 27.1
arahy.Tifrunner.gnm1.ann1.YE8PZ8 Arachis hypogaea HOM05D000181 ORTHO05D006133 8.4e-06 55.1 130 32.3
CARHR266240 Cardamine hirsuta HOM05D000181 ORTHO05D006133 8.4e-06 55.1 130 30.8
FvH4_2g31730 Fragaria vesca HOM05D000181 ORTHO05D004115 8.4e-06 55.1 132 28.8
FAN15G2475 Fragaria x ananassa HOM05D000181 ORTHO05D004115 8.4e-06 55.1 132 28.8
FAN24G2478 Fragaria x ananassa HOM05D000181 ORTHO05D004115 8.4e-06 55.1 132 28.8
FAN27G0883 Fragaria x ananassa HOM05D000181 ORTHO05D004115 8.4e-06 55.1 132 28.8
Gohir.D04G048400 Gossypium hirsutum HOM05D000181 ORTHO05D002783 8.4e-06 55.1 187 26.7
SEGI_05011 Sequoiadendron giganteum HOM05D000181 ORTHO05D002783 8.4e-06 55.1 188 25.5
TAR371G0649 Trochodendron aralioides HOM05D000181 ORTHO05D002783 8.4e-06 55.1 184 24.5


User provided reference genes

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