Gene: AT3G04340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G04340
  • Transcript Identifier AT3G04340.1
  • Gene Type Coding gene
  • Location Chr3 : 1146943-1153341 : negative

Gene Family Information

  • ID HOM05D000181
  • #Genes/#Species 2101/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G04340.1
  • symbol emb2458
  • full_name embryo defective 2458
  • uniprot F4J3N2

Descriptions

  • Description FtsH extracellular protease family
  • Computational description embryo defective 2458 (emb2458); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 32899 Blast hits to 29484 proteins in 3073 species: Archae - 1598; Bacteria - 9893; Metazoa - 6215; Fungi - 3644; Plants - 2880; Viruses - 25; Other Eukaryotes - 8644 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006508
IEA
GOA Databaseproteolysis
GO:0006508
IBA
Gene Ontologyproteolysis1
GO:0006508
IEA
InterProproteolysis
GO:0045454
IMP
Gene Ontologycell redox homeostasis2
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy
GO:0009658
IMP
Gene Ontologychloroplast organization2
GO:0080093
IMP
Gene Ontologyregulation of photorespiration2
GO:0045037
IDA
Gene Ontologyprotein import into chloroplast stroma3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0008233
IEA
GOA Databasepeptidase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004176
IEA
GOA DatabaseATP-dependent peptidase activity
GO:0004176
IBA
Gene OntologyATP-dependent peptidase activity1
GO:0004176
IEA
InterProATP-dependent peptidase activity
GO:0004222
IEA
Gene Ontologymetalloendopeptidase activity
GO:0004222
IEA
InterPrometalloendopeptidase activity
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0016464
IDA
Gene Ontologychloroplast protein-transporting ATPase activity3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0031969
IEA
GOA Databasechloroplast membrane
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast4
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma5
GO:0009536
IEA
GOA Databaseplastid
GO:0016020
IEA
GOA Databasemembrane
GO:0009941
IDA, HDA
Gene Ontologychloroplast envelope2 6
GO:0005829
HDA
Gene Ontologycytosol7
GO:0009706
IDA
Gene Ontologychloroplast inner membrane3
GO:0062091
IDA
Gene OntologyYcf2/FtsHi complex3
GO:0009534
IBA
Gene Ontologychloroplast thylakoid1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037219 Peptidase M41-like
IPR003959 ATPase, AAA-type, core
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR003593 AAA+ ATPase domain
IPR000642 Peptidase M41
Mapman id Description
35.1 not assigned.annotated