Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 3.7e-167 591.7 337 100.0
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 3.7e-167 591.7 337 100.0
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 8.2e-167 590.5 337 99.7
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 8.2e-167 590.5 337 99.7
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.1e-166 590.1 337 96.1
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 6.9e-166 587.4 337 97.6
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 5.8e-165 584.3 337 97.6
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 2.3e-153 545.8 339 89.1
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 2.5e-152 542.3 337 88.4
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 3.3e-152 542.0 337 87.8
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.7e-151 539.7 337 89.9
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 2.2e-151 539.3 338 88.8
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 2.8e-151 538.9 337 87.2
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.4e-150 536.6 337 88.7
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.4e-150 535.8 337 88.4
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 2.4e-150 535.8 337 88.4
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 6.9e-150 534.3 338 86.4
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.5e-149 533.1 337 88.1
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 3.4e-149 531.9 337 88.4
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 4.5e-149 531.6 337 89.0
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.0e-148 530.4 339 90.3
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.7e-148 529.6 338 86.7
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 2.9e-148 528.9 337 87.5
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 3.8e-148 528.5 337 87.2
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.8e-148 528.5 337 87.5
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.8e-148 528.5 337 86.9
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 6.5e-148 527.7 337 87.2
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 8.5e-148 527.3 339 87.3
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 8.5e-148 527.3 359 87.2
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 1.1e-147 526.9 337 86.6
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.1e-147 526.9 337 87.8
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 1.9e-147 526.2 338 87.3
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 3.2e-147 525.4 338 86.7
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 3.2e-147 525.4 337 86.6
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 4.2e-147 525.0 337 81.9
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 4.2e-147 525.0 349 85.4
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 5.5e-147 524.6 338 86.7
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 5.5e-147 524.6 337 86.4
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.2e-146 523.5 336 86.9
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.2e-146 523.5 336 86.9
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 1.6e-146 523.1 338 87.0
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 2.7e-146 522.3 340 86.2
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 6.1e-146 521.2 353 85.0
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 7.9e-146 520.8 337 88.7
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 7.9e-146 520.8 337 85.5
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 1.0e-145 520.4 337 87.2
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.4e-145 520.0 355 83.1
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.4e-145 520.0 355 83.1
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 1.4e-145 520.0 352 85.2
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.8e-145 519.6 337 86.1
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 1.8e-145 519.6 341 86.8
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.8e-145 519.6 337 85.5
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.3e-145 519.2 337 84.6
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 3.9e-145 518.5 337 90.2
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 5.1e-145 518.1 339 84.4
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 6.7e-145 517.7 340 88.5
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 8.8e-145 517.3 337 78.6
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.1e-144 516.9 340 85.9
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.1e-144 516.9 340 88.5
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 2.0e-144 516.2 338 86.1
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 4.8e-143 511.5 337 89.3
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 6.3e-143 511.1 338 86.7
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 4.1e-142 508.4 330 87.0
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 4.1e-142 508.4 338 84.0
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 9.1e-142 507.3 337 87.2
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 9.1e-142 507.3 337 84.0
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.2e-141 506.9 338 82.2
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 2.0e-141 506.1 338 83.7
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 3.5e-141 505.4 338 83.7
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.0e-140 503.8 337 82.8
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.3e-140 503.4 365 79.5
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 2.9e-140 502.3 372 79.0
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.8e-140 501.9 337 82.8
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 5.0e-140 501.5 337 83.1
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 8.5e-140 500.7 338 80.8
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 8.5e-140 500.7 338 81.1
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 8.5e-140 500.7 337 82.8
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.1e-139 500.4 339 84.4
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.1e-139 500.4 349 85.4
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 4.2e-139 498.4 338 85.8
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 5.5e-139 498.0 339 84.4
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.6e-138 496.5 347 82.7
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 8.0e-138 494.2 337 84.9
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 8.0e-138 494.2 321 85.7
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.0e-137 493.8 345 82.3
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 1.8e-137 493.0 347 83.0
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 2.3e-137 492.7 377 75.3
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 1.5e-136 490.0 338 82.2
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 1.5e-136 490.0 338 82.2
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.0e-136 489.6 331 84.9
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 7.4e-136 487.6 340 78.8
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 2.2e-135 486.1 337 81.0
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 4.8e-135 485.0 330 83.3
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 1.4e-134 483.4 337 76.9
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.4e-134 483.4 337 81.0
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.8e-134 483.0 325 86.2
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 1.8e-134 483.0 325 86.2
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.8e-134 483.0 321 85.0
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 1.2e-133 480.3 321 85.0
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.9e-131 473.0 367 76.6
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.8e-129 466.5 337 80.7
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 2.4e-126 456.1 305 86.2
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.0e-126 454.5 366 74.3
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.0e-126 454.5 366 74.3
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 1.2e-125 453.8 337 71.2
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.7e-125 452.6 337 78.0
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.4e-121 440.3 338 77.2
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 4.1e-118 428.7 334 78.1
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 7.0e-118 427.9 352 72.4
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 2.5e-115 419.5 284 84.5
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 7.5e-112 407.9 517 54.0
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.4e-110 403.7 274 85.8
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.3e-108 396.4 223 87.0
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.0e-108 395.2 339 75.5
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 6.0e-101 371.7 324 73.5
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.0e-100 370.9 321 71.3
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.8e-96 354.4 337 68.8
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.4e-94 350.5 256 83.6
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 7.8e-93 344.7 277 73.6
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 1.4e-89 334.0 337 63.8
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 2.0e-88 330.1 382 51.6
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 2.1e-82 310.1 147 98.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 1.9e-78 297.0 330 52.4
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.1e-65 254.6 171 74.3
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 2.4e-62 243.4 211 77.3
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 2.1e-61 240.4 326 48.5
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.5e-53 213.0 116 86.2
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.3e-43 179.9 82 98.8
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.0e-39 168.3 91 90.1
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 3.8e-39 166.4 165 62.4
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 8.8e-36 155.2 89 92.1
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.5e-35 154.5 89 89.9
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 8.5e-23 112.1 55 94.5
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 9.4e-22 108.6 64 90.6
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.7e-18 96.7 200 32.5
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 7.0e-17 92.4 200 28.5
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 6.1e-13 79.3 39 89.7
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.3e-10 71.6 75 77.3
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 3.7e-10 70.1 45 73.3
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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