Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 1.3e-146 523.1 267 100.0
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 3.1e-100 369.0 216 89.8
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 7.1e-97 357.8 289 70.6
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.6e-51 206.5 314 45.5
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 2.2e-50 203.4 314 45.2
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 2.1e-48 196.8 316 44.3
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 2.1e-48 196.8 316 44.3
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 4.6e-48 195.7 314 43.3
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 4.6e-48 195.7 323 43.7
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 1.5e-46 190.7 216 52.3
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 1.2e-43 181.0 327 43.1
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 7.7e-43 178.3 335 40.9
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 7.7e-43 178.3 339 39.8
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 1.0e-42 177.9 335 39.4
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 1.0e-42 177.9 330 40.9
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 1.7e-42 177.2 339 39.5
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.7e-42 177.2 311 41.8
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 2.2e-42 176.8 317 41.6
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 3.8e-42 176.0 315 41.9
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 8.5e-42 174.9 321 39.6
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 8.5e-42 174.9 321 39.9
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 8.5e-42 174.9 316 41.8
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 1.1e-41 174.5 271 45.4
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 1.1e-41 174.5 322 39.8
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 1.9e-41 173.7 317 39.7
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 2.5e-41 173.3 200 53.0
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 2.5e-41 173.3 258 46.1
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 2.5e-41 173.3 266 44.7
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 5.5e-41 172.2 272 43.0
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 5.5e-41 172.2 314 41.7
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 7.2e-41 171.8 201 52.2
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 7.2e-41 171.8 318 40.3
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 7.2e-41 171.8 330 39.7
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 9.4e-41 171.4 318 39.9
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 9.4e-41 171.4 256 46.5
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 1.2e-40 171.0 268 44.8
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.2e-40 171.0 195 53.8
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 1.6e-40 170.6 326 40.5
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 2.7e-40 169.9 335 37.3
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 2.7e-40 169.9 244 46.7
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 2.7e-40 169.9 260 45.0
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 2.7e-40 169.9 303 42.2
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 3.6e-40 169.5 273 44.0
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 3.6e-40 169.5 319 40.4
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 6.1e-40 168.7 198 51.5
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 6.1e-40 168.7 198 51.5
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 6.1e-40 168.7 198 51.5
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 7.9e-40 168.3 318 39.9
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.0e-39 167.9 320 40.6
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.4e-39 167.5 275 43.6
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.4e-39 167.5 270 43.7
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 1.8e-39 167.2 316 39.6
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 2.3e-39 166.8 196 52.0
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 2.3e-39 166.8 196 52.0
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 2.3e-39 166.8 260 44.6
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 2.3e-39 166.8 260 44.6
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 3.0e-39 166.4 314 40.1
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 3.0e-39 166.4 254 44.9
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 3.9e-39 166.0 210 50.0
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.9e-39 166.0 226 49.1
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 8.8e-39 164.9 317 39.7
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 1.5e-38 164.1 259 44.8
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 2.0e-38 163.7 317 39.7
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 2.0e-38 163.7 318 38.7
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 3.3e-38 162.9 335 37.0
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 4.3e-38 162.5 318 39.3
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 4.3e-38 162.5 318 39.3
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 5.7e-38 162.2 274 40.9
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 7.4e-38 161.8 199 51.3
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 1.3e-37 161.0 199 50.8
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 1.7e-37 160.6 198 51.0
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 1.7e-37 160.6 201 49.8
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 4.8e-37 159.1 321 38.9
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 6.3e-37 158.7 281 40.2
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 1.1e-36 157.9 336 36.6
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 1.1e-36 157.9 317 37.9
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 3.1e-36 156.4 164 57.3
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 3.1e-36 156.4 164 57.3
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 4.1e-36 156.0 289 39.8
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.1e-36 156.0 164 56.7
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 6.9e-36 155.2 202 50.5
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 9.1e-36 154.8 280 39.3
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 1.2e-35 154.5 213 49.3
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 1.5e-35 154.1 317 37.5
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 2.0e-35 153.7 269 39.4
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 2.0e-35 153.7 269 39.4
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 2.6e-35 153.3 354 36.2
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 3.4e-35 152.9 326 38.0
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 5.9e-35 152.1 287 39.7
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 1.3e-34 151.0 191 47.1
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 2.2e-34 150.2 197 50.3
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.9e-34 149.8 226 44.7
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 3.8e-34 149.4 226 44.7
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 3.8e-34 149.4 222 45.5
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 1.1e-33 147.9 225 44.4
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 1.4e-33 147.5 226 44.2
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 2.5e-33 146.7 213 44.6
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 3.2e-33 146.4 193 46.6
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 3.2e-33 146.4 280 38.2
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 5.5e-33 145.6 189 49.7
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.4e-33 144.8 234 42.7
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 9.4e-33 144.8 277 40.1
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 1.2e-32 144.4 311 36.3
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 1.6e-32 144.1 262 40.8
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.1e-32 143.7 227 43.6
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 6.1e-32 142.1 203 47.8
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 6.1e-32 142.1 197 47.2
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 1.4e-31 141.0 293 38.9
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 6.7e-31 138.7 148 57.4
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 2.0e-30 137.1 199 45.2
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 3.3e-30 136.3 316 36.1
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 3.3e-30 136.3 316 36.4
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 3.3e-30 136.3 267 38.6
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 4.4e-30 136.0 316 36.1
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.7e-29 134.0 116 62.9
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 2.8e-29 133.3 188 43.6
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 4.8e-29 132.5 201 44.3
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 4.8e-29 132.5 313 34.5
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 6.3e-29 132.1 228 41.2
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 6.3e-29 132.1 211 42.7
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 2.4e-28 130.2 217 42.4
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 5.9e-27 125.6 146 50.0
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 5.0e-26 122.5 235 39.1
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 5.0e-26 122.5 235 39.1
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.1e-22 111.3 159 47.2
CAN.G1652.14 Capsicum annuum HOM05D003241 ORTHO05D003812 7.5e-22 108.6 118 53.4
Actinidia38515 Actinidia chinensis HOM05D003241 ORTHO05D003812 6.3e-21 105.5 237 38.4
CSS0028609 Camellia sinensis var. sinensis HOM05D003241 ORTHO05D003812 5.9e-19 99.0 226 35.4
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 2.2e-18 97.1 138 47.8
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 5.0e-18 95.9 132 47.0
CDE06G2045 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 1.9e-17 94.0 160 41.9
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 2.5e-17 93.6 191 35.1
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.2e-16 91.3 133 45.1
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 2.3e-15 87.0 100 54.0
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 8.8e-15 85.1 155 38.1
Psat0s3089g0040 Pisum sativum HOM05D003241 ORTHO05D003812 8.8e-15 85.1 202 36.1
VMungo1127G0135 Vigna mungo HOM05D003241 ORTHO05D003812 8.8e-15 85.1 228 34.2
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 1.5e-14 84.3 150 40.7
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 2.0e-14 84.0 95 49.5
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 3.4e-14 83.2 124 42.7
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 1.3e-13 81.3 151 35.8
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 2.8e-13 80.1 158 36.7
Lju445A0T13 Lonicera japonica HOM05D003241 ORTHO05D003812 3.7e-13 79.7 105 48.6
Haze_08784 Corylus avellana HOM05D003241 ORTHO05D003812 4.8e-13 79.3 104 46.2
BcaC05g29043 Brassica carinata HOM05D003241 ORTHO05D003812 8.3e-13 78.6 127 42.5
BcaB06g25362 Brassica carinata HOM05D003241 ORTHO05D003812 1.1e-12 78.2 213 31.9
Thhalv10022422m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 1.1e-12 78.2 129 38.8
Hma1.2p1_0765F.1_g215090 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 1.1e-12 78.2 77 55.8
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 1.4e-12 77.8 143 35.0
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 2.4e-12 77.0 131 40.5
Hma1.2p1_0358F.1_g134820 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 2.4e-12 77.0 77 55.8
C05p52560 Brassica napus HOM05D003241 ORTHO05D003812 3.1e-12 76.6 134 38.8
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 4.1e-12 76.3 128 42.2
Rhsim06G0183100 Rhododendron simsii HOM05D003241 ORTHO05D003812 5.4e-12 75.9 106 45.3
QL11p041824 Quercus lobata HOM05D003241 ORTHO05D003812 7.0e-12 75.5 227 30.8
SMO351G0236 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 7.0e-12 75.5 133 37.6
QL09p049197 Quercus lobata HOM05D003241 ORTHO05D003812 1.2e-11 74.7 87 52.9
SMO111G0085 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.2e-11 74.7 95 44.2
Cre03.g156100 Chlamydomonas reinhardtii HOM05D003241 ORTHO05D003812 1.6e-11 74.3 130 39.2
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 2.0e-11 73.9 158 37.3
Rhsim06G0182100 Rhododendron simsii HOM05D003241 ORTHO05D003812 2.7e-11 73.6 106 44.3
Carub.0003s1438 Capsella rubella HOM05D003241 ORTHO05D003812 2.2e-10 70.5 121 39.7
VMungo1127G1632 Vigna mungo HOM05D003241 ORTHO05D003812 1.9e-09 67.4 78 53.8
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 3.2e-09 66.6 152 34.2
Hma1.2p1_0148F.1_g066050 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 3.6e-08 63.2 38 76.3
SalBow6G1729 Salvia bowleyana HOM05D003241 ORTHO05D003812 4.7e-08 62.8 142 35.2
SalBow6G5488 Salvia bowleyana HOM05D003241 ORTHO05D003812 4.7e-08 62.8 142 35.2
Actinidia16705 Actinidia chinensis HOM05D003241 ORTHO05D003812 3.0e-07 60.1 91 44.0
AagrBONN_evm.TU.Sc2ySwM_344.225 Anthoceros agrestis HOM05D003241 ORTHO05D003812 1.2e-06 58.2 73 49.3
Lj1A444G10 Lonicera japonica HOM05D003241 ORTHO05D003812 2.0e-06 57.4 143 34.3


User provided reference genes

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