Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 0.0e+00 1180.6 609 100.0
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 0.0e+00 1174.1 609 99.2
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 0.0e+00 1096.6 585 93.7
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 2.0e-301 1038.5 587 88.4
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 2.9e-287 991.5 586 84.8
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 1.9e-278 962.2 587 81.6
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 4.2e-278 961.1 609 79.0
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 3.0e-276 954.9 587 80.6
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 2.4e-273 945.3 582 79.9
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 3.1e-273 944.9 582 79.9
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 6.9e-273 943.7 610 77.5
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 9.9e-272 939.9 610 77.5
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 6.4e-271 937.2 587 79.4
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 8.4e-271 936.8 587 79.6
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 1.1e-270 936.4 609 77.3
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 1.1e-270 936.4 609 77.3
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 9.3e-270 933.3 611 76.6
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 7.9e-269 930.2 587 78.7
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 1.0e-268 929.9 587 78.7
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 2.3e-268 928.7 607 76.3
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 1.1e-267 926.4 602 77.9
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 3.3e-267 924.9 610 75.7
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 9.6e-267 923.3 610 75.4
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 1.6e-266 922.5 650 74.0
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 4.0e-265 917.9 586 78.2
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 4.0e-265 917.9 587 77.5
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 6.9e-265 917.1 589 79.1
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 1.5e-264 916.0 587 77.9
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 1.5e-264 916.0 585 78.3
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 4.5e-264 914.4 585 78.1
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 7.6e-264 913.7 526 84.8
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 1.3e-263 912.9 595 76.0
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 8.4e-263 910.2 609 75.4
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 1.1e-262 909.8 586 76.5
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 1.6e-261 906.0 593 76.9
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 1.3e-260 902.9 587 77.0
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 1.6e-258 896.0 585 76.8
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 1.6e-258 896.0 612 74.5
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.6e-258 896.0 610 74.3
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 6.2e-258 894.0 610 74.3
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 6.2e-258 894.0 585 76.4
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 8.1e-258 893.6 585 76.8
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 3.1e-257 891.7 585 76.2
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 4.0e-257 891.3 550 79.8
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 4.5e-256 887.9 587 76.0
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 7.6e-256 887.1 587 75.6
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 2.9e-255 885.2 587 75.5
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 4.9e-255 884.4 589 75.4
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 6.5e-255 884.0 538 81.2
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 8.4e-255 883.6 588 75.0
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 1.1e-254 883.2 532 81.2
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 1.9e-254 882.5 589 75.2
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 4.2e-254 881.3 588 75.0
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 3.5e-253 878.2 520 86.2
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 5.7e-251 870.9 587 74.6
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 2.8e-250 868.6 589 73.7
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 4.1e-249 864.8 699 66.8
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 2.6e-248 862.1 589 73.9
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 1.0e-247 860.1 589 74.0
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 8.4e-247 857.1 588 73.6
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 1.8e-244 849.4 589 71.6
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 3.9e-244 848.2 589 71.6
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 8.7e-244 847.0 591 73.4
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 1.9e-243 845.9 588 72.4
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 2.5e-243 845.5 591 73.4
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 1.6e-242 842.8 596 71.6
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 1.8e-241 839.3 587 71.7
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 1.8e-241 839.3 587 72.1
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 1.2e-240 836.6 576 73.3
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 1.5e-240 836.3 590 72.7
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 2.0e-240 835.9 586 71.3
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 2.0e-240 835.9 587 71.4
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 1.0e-239 833.6 614 70.4
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 1.4e-238 829.7 614 69.2
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 1.9e-238 829.3 754 60.1
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 7.2e-238 827.4 613 69.0
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 1.2e-237 826.6 586 72.7
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 4.6e-237 824.7 585 70.6
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 4.6e-237 824.7 618 68.6
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 2.6e-232 808.9 599 68.9
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 4.5e-232 808.1 494 80.0
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 1.7e-231 806.2 510 76.1
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 2.0e-227 792.7 589 69.6
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 4.5e-224 781.6 581 67.5
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 5.9e-224 781.2 586 67.2
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 3.8e-223 778.5 604 68.4
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 2.3e-220 769.2 717 59.4
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 3.0e-220 768.8 587 67.5
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 9.7e-219 763.8 639 64.6
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 5.3e-217 758.1 568 68.8
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 1.2e-205 720.3 524 68.3
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 8.8e-204 714.1 443 79.5
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 6.3e-202 708.0 589 65.0
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 7.0e-201 704.5 556 64.0
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 9.2e-201 704.1 581 62.5
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 2.3e-196 689.5 443 78.3
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.2e-195 687.2 535 65.2
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 1.4e-188 663.7 557 62.1
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 2.7e-176 622.9 449 70.4
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 5.6e-158 562.0 383 72.3
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 2.5e-150 536.6 364 74.2
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 8.4e-138 495.0 287 86.4
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.6e-133 480.7 323 73.7
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 2.8e-133 479.9 351 73.8
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 1.9e-129 467.2 309 74.8
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 5.7e-126 455.7 270 78.9
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 9.7e-126 454.9 559 47.2
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 1.8e-100 370.9 259 73.7
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 2.8e-93 347.1 252 70.6
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 2.2e-85 320.9 187 82.9
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 1.7e-82 311.2 260 61.2
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 1.5e-73 281.6 444 38.3
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 9.2e-68 262.3 201 71.6
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 2.0e-62 244.6 181 67.4
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 1.9e-57 228.0 133 84.2
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 6.6e-50 203.0 108 83.3
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 6.6e-50 203.0 375 36.3
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 3.1e-47 194.1 137 70.8
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 5.2e-47 193.4 178 59.0
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 1.7e-45 188.3 133 72.9
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 9.9e-38 162.5 189 51.9
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 2.9e-37 161.0 107 67.3
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 1.2e-30 139.0 175 52.6
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 2.8e-24 117.9 267 29.6
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 6.2e-24 116.7 66 78.8
vmacro23293 Vaccinium macrocarpon HOM05D000003 ORTHO05D000006 4.1e-07 60.8 112 36.6
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 5.9e-06 57.0 55 60.0


User provided reference genes

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