Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.7e-143 510.4 243 100.0
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 3.6e-108 395.2 306 68.6
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 4.2e-104 381.7 245 76.7
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.1e-99 365.5 306 63.7
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.0e-99 364.0 245 74.3
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 3.9e-94 348.6 306 60.1
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.0e-86 323.9 231 71.4
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.3e-85 318.9 305 54.1
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.4e-85 317.8 271 64.9
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 4.8e-84 315.1 305 52.8
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.1e-83 312.4 312 52.9
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.2e-82 310.5 305 52.8
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.4e-82 308.9 304 53.9
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.2e-81 306.2 305 53.1
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 4.9e-81 305.1 304 52.0
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 5.5e-80 301.6 304 52.0
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.5e-79 298.9 282 55.3
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 6.0e-79 298.1 291 53.3
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 6.0e-79 298.1 311 49.8
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 6.0e-79 298.1 343 46.9
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 7.9e-79 297.7 305 50.2
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.0e-78 297.4 304 52.0
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 8.7e-78 294.3 292 53.1
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 8.7e-78 294.3 304 52.3
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.7e-78 294.3 309 50.2
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 8.7e-78 294.3 305 51.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.1e-77 293.9 305 51.5
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.1e-77 293.9 304 51.6
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 5.6e-77 291.6 298 51.7
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 5.6e-77 291.6 291 51.5
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 5.6e-77 291.6 253 57.3
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.6e-76 290.0 304 50.0
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.8e-76 289.3 235 59.6
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 3.7e-76 288.9 258 55.0
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.4e-75 287.0 307 49.8
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 1.4e-75 287.0 266 54.9
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 2.4e-75 286.2 258 56.2
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 2.4e-75 286.2 304 50.7
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 2.4e-75 286.2 290 52.4
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 3.1e-75 285.8 304 50.7
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 6.9e-75 284.6 304 48.4
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 9.0e-75 284.3 304 49.0
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.0e-75 284.3 305 51.5
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.5e-74 283.5 291 51.5
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.0e-74 283.1 305 51.1
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 2.0e-74 283.1 304 48.7
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 3.4e-74 282.3 291 50.2
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 4.5e-74 282.0 305 49.8
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.7e-73 280.0 290 50.7
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.7e-73 280.0 258 52.3
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.7e-73 280.0 260 54.6
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.2e-73 279.6 258 56.2
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.2e-73 279.6 305 47.2
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 2.9e-73 279.3 291 50.5
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 2.9e-73 279.3 263 53.2
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 3.8e-73 278.9 304 49.7
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.9e-73 278.5 304 49.3
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 4.9e-73 278.5 303 48.2
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 8.4e-73 277.7 304 49.0
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 8.4e-73 277.7 273 58.6
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.1e-72 277.3 304 49.3
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.1e-72 277.3 291 50.2
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.1e-72 277.3 291 50.2
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.4e-72 276.9 295 50.8
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 1.4e-72 276.9 291 50.5
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.5e-72 276.2 305 46.9
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 2.5e-72 276.2 305 46.9
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 2.5e-72 276.2 305 46.9
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.5e-72 276.2 291 50.2
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.2e-72 275.8 302 48.3
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 3.2e-72 275.8 305 46.9
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 3.2e-72 275.8 305 48.2
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 3.2e-72 275.8 298 49.7
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 3.2e-72 275.8 302 47.7
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.2e-72 275.4 305 46.9
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.2e-72 275.4 305 46.9
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 4.2e-72 275.4 308 48.7
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 4.2e-72 275.4 292 49.0
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 7.1e-72 274.6 291 50.5
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 9.3e-72 274.2 291 49.8
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 9.3e-72 274.2 244 54.5
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.2e-71 273.9 335 45.1
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.2e-71 273.9 299 47.2
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.6e-71 273.5 305 47.2
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.6e-71 273.5 291 50.2
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.6e-71 273.5 299 47.2
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.1e-71 273.1 291 49.1
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 3.5e-71 272.3 305 47.2
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.6e-71 271.9 304 49.0
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.0e-70 270.8 304 47.7
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 1.0e-70 270.8 291 50.2
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.0e-70 270.8 293 47.8
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.8e-70 270.0 306 46.7
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 1.8e-70 270.0 305 46.9
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.3e-70 269.6 298 49.0
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 2.3e-70 269.6 291 49.5
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 2.3e-70 269.6 306 47.4
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 5.1e-70 268.5 306 47.1
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 6.7e-70 268.1 291 49.1
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 6.7e-70 268.1 291 49.5
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.7e-70 268.1 290 46.9
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 6.7e-70 268.1 304 47.7
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 8.7e-70 267.7 235 56.6
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 8.7e-70 267.7 290 46.9
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 8.7e-70 267.7 291 49.8
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.1e-69 267.3 291 49.5
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.9e-69 266.5 312 44.9
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 3.3e-69 265.8 291 49.1
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 7.4e-69 264.6 238 54.6
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 1.6e-68 263.5 316 46.5
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 2.2e-68 263.1 305 45.9
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 1.8e-67 260.0 304 47.0
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.4e-67 259.6 283 48.4
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.4e-67 259.6 248 52.0
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 3.1e-67 259.2 301 46.8
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 6.9e-67 258.1 230 54.3
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.0e-66 256.5 233 53.6
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 4.5e-66 255.4 297 48.1
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 1.3e-65 253.8 282 47.9
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.3e-65 253.8 293 46.8
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.4e-62 243.8 260 45.8
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.8e-59 233.4 243 47.3
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 6.9e-59 231.5 310 40.0
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.9e-56 223.4 247 50.2
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 2.0e-53 213.4 245 44.1
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 9.7e-53 211.1 248 47.6
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.7e-52 210.3 232 47.0
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.0e-50 203.4 297 37.7
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 8.0e-47 191.4 247 41.3
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.0e-46 191.0 240 46.2
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.0e-46 191.0 299 38.1
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.3e-44 184.1 164 56.1
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 7.0e-43 178.3 227 44.9
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.6e-42 176.4 121 66.1
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 5.9e-42 175.3 114 71.1
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.0e-38 164.5 188 44.7
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.0e-30 137.9 198 39.4
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 1.8e-30 137.1 90 68.9
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.0e-26 123.6 79 68.4
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.3e-25 120.2 135 45.9
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.2e-21 107.8 75 56.0
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 4.9e-20 102.4 64 76.6
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 4.9e-20 102.4 123 43.9
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.0e-18 97.1 152 39.5
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 1.7e-17 94.0 62 59.7
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.5e-16 90.9 64 67.2
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 2.3e-14 83.6 67 58.2
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 5.8e-13 79.0 59 57.6
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 9.5e-08 61.6 41 65.9
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 5.2e-06 55.8 94 35.1


User provided reference genes

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