Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g020150.3 Solanum lycopersicum HOM05D003382 ORTHO05D003930 1.8e-17 91.3 40 100.0
Solyc11g011850.2 Solanum lycopersicum HOM05D003382 ORTHO05D003930 1.0e-12 75.5 34 94.1
Sopen00g006600 Solanum pennellii HOM05D000002 ORTHO05D000001 1.0e-12 75.5 34 94.1
Sopen11g006680 Solanum pennellii HOM05D003382 ORTHO05D003930 1.0e-12 75.5 34 94.1
PGSC0003DMG400013327 Solanum tuberosum HOM05D003382 ORTHO05D003930 1.8e-12 74.7 34 94.1
Nitab4.5_0002214g0040 Nicotiana tabacum HOM05D003382 ORTHO05D003930 1.2e-11 72.0 36 86.1
Nitab4.5_0002465g0060 Nicotiana tabacum HOM05D003382 ORTHO05D003930 1.2e-11 72.0 36 86.1
Oeu014792.2 Olea europaea HOM05D003382 ORTHO05D003930 1.3e-10 68.6 37 78.4
Hma1.2p1_2648F.1_g326090 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 1.7e-10 68.2 37 81.1
CAN.G222.166 Capsicum annuum HOM05D003382 ORTHO05D003930 2.2e-10 67.8 34 82.4
Dinv30023 Davidia involucrata HOM05D003382 ORTHO05D003930 2.2e-10 67.8 35 80.0
Oeu009828.1 Olea europaea HOM05D003382 ORTHO05D003930 2.2e-10 67.8 37 75.7
Peaxi162Scf00078g01420 Petunia axillaris HOM05D003382 ORTHO05D003930 2.2e-10 67.8 34 85.3
Cc07_g06350 Coffea canephora HOM05D003382 ORTHO05D003930 3.7e-10 67.0 32 84.4
arahy.Tifrunner.gnm1.ann1.27CBEW Arachis hypogaea HOM05D003382 ORTHO05D003930 4.9e-10 66.6 34 79.4
arahy.Tifrunner.gnm1.ann1.S4MMCZ Arachis hypogaea HOM05D003382 ORTHO05D003930 4.9e-10 66.6 34 79.4
CiPaw.01G014100 Carya illinoinensis HOM05D003382 ORTHO05D003930 4.9e-10 66.6 30 93.3
Actinidia03805 Actinidia chinensis HOM05D003382 ORTHO05D003930 6.4e-10 66.2 36 80.6
CANSAT25G0401 Cannabis sativa HOM05D003382 ORTHO05D003930 6.4e-10 66.2 34 79.4
Lj4A155G86 Lonicera japonica HOM05D003382 ORTHO05D003930 6.4e-10 66.2 32 84.4
Sabra07G0042400 Salix brachista HOM05D003382 ORTHO05D003930 8.3e-10 65.9 32 84.4
CSS0022388 Camellia sinensis var. sinensis HOM05D003382 ORTHO05D003930 1.1e-09 65.5 34 73.5
Cfa004049 Carpinus fangiana HOM05D003382 ORTHO05D003930 1.1e-09 65.5 30 90.0
Haze_15362 Corylus avellana HOM05D003382 ORTHO05D003930 1.1e-09 65.5 30 90.0
Glyma.01G189200 Glycine max HOM05D003382 ORTHO05D003930 1.1e-09 65.5 34 79.4
TAR381G1333 Trochodendron aralioides HOM05D003382 ORTHO05D003930 1.1e-09 65.5 34 76.5
Dinv26854 Davidia involucrata HOM05D003382 ORTHO05D003930 1.4e-09 65.1 32 84.4
Eucgr.I00880 Eucalyptus grandis HOM05D003382 ORTHO05D003930 1.4e-09 65.1 34 79.4
TAR628G1387 Trochodendron aralioides HOM05D003382 ORTHO05D003930 1.4e-09 65.1 34 76.5
Aqoxy5G01170 Aquilegia oxysepala HOM05D003382 ORTHO05D003930 1.8e-09 64.7 33 75.8
Ca_24746_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 1.8e-09 64.7 34 76.5
Actinidia16465 Actinidia chinensis HOM05D003382 ORTHO05D003930 2.4e-09 64.3 34 82.4
Phvul.002G016000 Phaseolus vulgaris HOM05D003382 ORTHO05D003930 2.4e-09 64.3 33 78.8
Psat0s1867g0120 Pisum sativum HOM05D003382 ORTHO05D003930 2.4e-09 64.3 35 71.4
Hma1.2p1_0017F.1_g011810 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 3.2e-09 63.9 37 70.3
Prupe.6G230500 Prunus persica HOM05D003382 ORTHO05D003930 3.2e-09 63.9 34 79.4
CDE01G0400 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 4.1e-09 63.5 37 67.6
MD02G1177600 Malus domestica HOM05D003382 ORTHO05D003930 4.1e-09 63.5 34 76.5
Oeu013240.1 Olea europaea HOM05D003382 ORTHO05D003930 4.1e-09 63.5 36 77.8
TPR.G26871 Trifolium pratense HOM05D003382 ORTHO05D003930 4.1e-09 63.5 34 73.5
Atru.chr3.265 Acer truncatum HOM05D003382 ORTHO05D003930 5.4e-09 63.2 30 86.7
Glyma.17G168400 Glycine max HOM05D003382 ORTHO05D003930 5.4e-09 63.2 34 70.6
Potri.007G047500 Populus trichocarpa HOM05D003382 ORTHO05D003930 5.4e-09 63.2 30 83.3
TAR625G0350 Trochodendron aralioides HOM05D003382 ORTHO05D003930 5.4e-09 63.2 33 72.7
ECA232G1178 Erigeron canadensis HOM05D003382 ORTHO05D003930 7.0e-09 62.8 37 67.6
TWI73G0794 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 7.0e-09 62.8 31 83.9
GSVIVG01022064001 Vitis vinifera HOM05D003382 ORTHO05D003930 7.0e-09 62.8 34 76.5
Ca_22129_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 9.2e-09 62.4 34 70.6
Glyma.11G053000 Glycine max HOM05D003382 ORTHO05D003930 1.2e-08 62.0 34 76.5
Glyma.16G095800 Glycine max HOM05D003382 ORTHO05D003930 1.2e-08 62.0 34 70.6
Lalb_Chr09g0323331 Lupinus albus HOM05D003382 ORTHO05D003930 1.2e-08 62.0 34 70.6
Sed0013280 Sechium edule HOM05D003382 ORTHO05D003930 1.2e-08 62.0 33 72.7
TAR376G0471 Trochodendron aralioides HOM05D003382 ORTHO05D003930 1.2e-08 62.0 34 70.6
Ciclev10025401m.g Citrus clementina HOM05D003382 ORTHO05D003930 1.6e-08 61.6 30 83.3
Duzib187G0504 Durio zibethinus HOM05D003382 ORTHO05D003930 1.6e-08 61.6 34 70.6
HanXRQChr01g0004101 Helianthus annuus HOM05D003382 ORTHO05D003930 1.6e-08 61.6 37 64.9
HanXRQChr14g0460431 Helianthus annuus HOM05D003382 ORTHO05D003930 1.6e-08 61.6 37 64.9
Lj2g0012816 Lotus japonicus HOM05D003382 ORTHO05D003930 1.6e-08 61.6 32 75.0
Sabra05G0112900 Salix brachista HOM05D003382 ORTHO05D003930 1.6e-08 61.6 30 83.3
CDE02G3038 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 2.0e-08 61.2 37 64.9
FAN23G3096 Fragaria x ananassa HOM05D003382 ORTHO05D003930 2.0e-08 61.2 34 76.5
FAN26G1389 Fragaria x ananassa HOM05D003382 ORTHO05D003930 2.0e-08 61.2 34 76.5
FAN28G1977 Fragaria x ananassa HOM05D003382 ORTHO05D003930 2.0e-08 61.2 34 76.5
FAN28G2539 Fragaria x ananassa HOM05D003382 ORTHO05D003930 2.0e-08 61.2 34 76.5
Manes.12G107600 Manihot esculenta HOM05D003382 ORTHO05D003930 2.0e-08 61.2 32 71.9
QL06p040205 Quercus lobata HOM05D003382 ORTHO05D003930 2.0e-08 61.2 34 79.4
MD15G1287400 Malus domestica HOM05D003382 ORTHO05D003930 2.7e-08 60.8 33 75.8
Sc03g0001810 Simmondsia chinensis HOM05D003382 ORTHO05D003930 2.7e-08 60.8 31 77.4
TWI09G1091 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 2.7e-08 60.8 29 86.2
Gohir.A11G196300 Gossypium hirsutum HOM05D003382 ORTHO05D003930 3.5e-08 60.5 34 67.6
Manes.13G119600 Manihot esculenta HOM05D003382 ORTHO05D003930 3.5e-08 60.5 32 71.9
Rhsim08G0098200 Rhododendron simsii HOM05D003382 ORTHO05D003930 3.5e-08 60.5 35 80.0
RcHm_v2.0_Chr2g0106411 Rosa chinensis HOM05D003382 ORTHO05D003930 3.5e-08 60.5 34 73.5
Thecc.01G062100 Theobroma cacao HOM05D003382 ORTHO05D003930 3.5e-08 60.5 34 70.6
TPR.G14589 Trifolium pratense HOM05D003382 ORTHO05D003930 3.5e-08 60.5 34 67.6
ClCG01G016990 Citrullus lanatus HOM05D003382 ORTHO05D003930 4.6e-08 60.1 30 80.0
MELO3C007577.2 Cucumis melo HOM05D003382 ORTHO05D003930 4.6e-08 60.1 30 80.0
CsaV3_6G043470 Cucumis sativus L. HOM05D003382 ORTHO05D003930 4.6e-08 60.1 30 80.0
Lj4g0013634 Lotus japonicus HOM05D003382 ORTHO05D003930 4.6e-08 60.1 34 67.6
EL10Ac6g15703 Beta vulgaris HOM05D003382 ORTHO05D003930 5.9e-08 59.7 33 69.7
Duzib264G1059 Durio zibethinus HOM05D003382 ORTHO05D003930 5.9e-08 59.7 34 67.6
FvH4_1g16500 Fragaria vesca HOM05D003382 ORTHO05D003930 5.9e-08 59.7 34 73.5
FAN19G0190 Fragaria x ananassa HOM05D003382 ORTHO05D003930 5.9e-08 59.7 34 73.5
Medtr5g016600 Medicago truncatula HOM05D003382 ORTHO05D003930 5.9e-08 59.7 33 69.7
Zm00001eb273460 Zea mays HOM05D003382 ORTHO05D003930 5.9e-08 59.7 37 67.6
Duzib147G0315 Durio zibethinus HOM05D003382 ORTHO05D003930 7.8e-08 59.3 34 67.6
Gohir.D11G202200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 7.8e-08 59.3 34 64.7
Gorai.007G216800 Gossypium raimondii HOM05D003382 ORTHO05D003930 7.8e-08 59.3 34 64.7
Medtr4g094912 Medicago truncatula HOM05D003382 ORTHO05D003930 7.8e-08 59.3 30 73.3
vmacro17969 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 7.8e-08 59.3 35 77.1
Lalb_Chr16g0378671 Lupinus albus HOM05D003382 ORTHO05D003930 1.0e-07 58.9 34 67.6
Psat2g028760 Pisum sativum HOM05D003382 ORTHO05D003930 1.0e-07 58.9 34 64.7
Potri.005G141500 Populus trichocarpa HOM05D003382 ORTHO05D003930 1.0e-07 58.9 30 83.3
Sed0001836 Sechium edule HOM05D003382 ORTHO05D003930 1.0e-07 58.9 33 66.7
Zm00001eb098600 Zea mays HOM05D003382 ORTHO05D003930 1.0e-07 58.9 37 64.9
DCAR_025752 Daucus carota HOM05D003382 ORTHO05D003930 1.3e-07 58.5 33 63.6
Zm00001eb225770 Zea mays HOM05D003382 ORTHO05D003930 1.3e-07 58.5 37 64.9
PSO210G2217 Papaver somniferum HOM05D003382 ORTHO05D003930 1.7e-07 58.2 30 76.7
Cpa.g.sc55.103 Carica papaya HOM05D003382 ORTHO05D003930 2.3e-07 57.8 30 76.7
Gorai.004G051000 Gossypium raimondii HOM05D003382 ORTHO05D003930 2.3e-07 57.8 34 64.7
HanXRQChr15g0491931 Helianthus annuus HOM05D003382 ORTHO05D003930 2.3e-07 57.8 33 66.7
VMungo1215G2685 Vigna mungo HOM05D003382 ORTHO05D003930 2.3e-07 57.8 33 78.8
ATR0762G014 Amborella trichopoda HOM05D003382 ORTHO05D003930 3.0e-07 57.4 31 71.0
COL.COLO4_11466 Corchorus olitorius HOM05D003382 ORTHO05D003930 3.0e-07 57.4 34 70.6
Gorai.004G051100 Gossypium raimondii HOM05D003382 ORTHO05D003930 3.0e-07 57.4 34 64.7
HanXRQChr01g0030391 Helianthus annuus HOM05D003382 ORTHO05D003930 3.0e-07 57.4 32 68.8
Lsat_1_v5_gn_4_164401 Lactuca sativa HOM05D003382 ORTHO05D003930 3.0e-07 57.4 34 64.7
PSO170G3452 Papaver somniferum HOM05D003382 ORTHO05D003930 3.0e-07 57.4 30 73.3
AUR62003925 Chenopodium quinoa HOM05D003382 ORTHO05D003930 3.9e-07 57.0 31 77.4
AUR62038239 Chenopodium quinoa HOM05D003382 ORTHO05D003930 3.9e-07 57.0 31 77.4
Gohir.A02G155500 Gossypium hirsutum HOM05D003382 ORTHO05D003930 3.9e-07 57.0 34 67.6
Gohir.D03G025200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 3.9e-07 57.0 34 70.6
Gorai.003G026800 Gossypium raimondii HOM05D003382 ORTHO05D003930 3.9e-07 57.0 34 70.6
Lalb_Chr05g0213401 Lupinus albus HOM05D003382 ORTHO05D003930 3.9e-07 57.0 34 67.6
SGA_v2.0_scaffold143G35795 Striga asiatica HOM05D003382 ORTHO05D003930 3.9e-07 57.0 32 71.9
AL7G13650 Arabidopsis lyrata HOM05D003382 ORTHO05D003930 5.0e-07 56.6 37 59.5
AT4G36890 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 5.0e-07 56.6 37 59.5
Eucgr.H02219 Eucalyptus grandis HOM05D003382 ORTHO05D003930 5.0e-07 56.6 31 77.4
Lsat_1_v5_gn_2_85701 Lactuca sativa HOM05D003382 ORTHO05D003930 5.0e-07 56.6 32 65.6
Carub.0007s0306 Capsella rubella HOM05D003382 ORTHO05D003930 6.6e-07 56.2 37 56.8
PSO541G0593 Papaver somniferum HOM05D003382 ORTHO05D003930 6.6e-07 56.2 32 68.8
PSO675G2844 Papaver somniferum HOM05D003382 ORTHO05D003930 6.6e-07 56.2 32 68.8
PGR004G0325 Punica granatum HOM05D003382 ORTHO05D003930 6.6e-07 56.2 34 67.6
Hund16361 Selenicereus undatus HOM05D003382 ORTHO05D003930 6.6e-07 56.2 37 62.2
Sc07g0000690 Simmondsia chinensis HOM05D003382 ORTHO05D003930 6.6e-07 56.2 31 77.4
SGA_v2.0_scaffold15G07357 Striga asiatica HOM05D003382 ORTHO05D003930 6.6e-07 56.2 33 63.6
CiPaw.02G007100 Carya illinoinensis HOM05D003382 ORTHO05D003930 8.6e-07 55.8 30 76.7
Thhalv10024924m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 1.1e-06 55.5 37 56.8
Lj7A75T29 Lonicera japonica HOM05D003382 ORTHO05D003930 1.1e-06 55.5 32 71.9
Rhsim10G0113400 Rhododendron simsii HOM05D003382 ORTHO05D003930 1.1e-06 55.5 34 73.5
vmacro05261 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 1.1e-06 55.5 34 73.5
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 1.1e-06 55.5 36 63.9
MSTRG.3440 Avicennia marina HOM05D003382 ORTHO05D003930 1.9e-06 54.7 33 72.7
Migut.L00178 Erythranthe guttata HOM05D003382 ORTHO05D003930 1.9e-06 54.7 32 71.9
SHI34083 Sapria himalayana HOM05D003382 ORTHO05D003930 1.9e-06 54.7 32 65.6
THA.LOC104807598 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 1.9e-06 54.7 28 75.0
unitig_21.g20471 Utricularia gibba HOM05D003382 ORTHO05D003930 2.5e-06 54.3 31 67.7
VMungo0251G2741 Vigna mungo HOM05D003382 ORTHO05D003930 2.5e-06 54.3 28 67.9
ECA238G0958 Erigeron canadensis HOM05D003382 ORTHO05D003930 3.3e-06 53.9 33 57.6
Sp7g34880 Schrenkiella parvula HOM05D003382 ORTHO05D003930 9.5e-06 52.4 28 71.4


User provided reference genes

Program Settings