Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.5e-65 252.7 124 100.0
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 7.4e-49 197.2 96 100.0
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 6.3e-48 194.1 96 99.0
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 1.1e-47 193.4 94 98.9
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 1.4e-47 193.0 93 100.0
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.8e-47 192.6 96 94.8
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.8e-47 192.6 96 94.8
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 3.1e-47 191.8 96 95.8
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 3.1e-47 191.8 96 95.8
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 3.1e-47 191.8 96 96.9
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 5.3e-47 191.0 95 95.8
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.3e-47 191.0 96 93.8
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 6.9e-47 190.7 96 95.8
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 6.9e-47 190.7 96 95.8
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.2e-46 189.9 96 93.8
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.2e-46 189.9 96 93.8
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 1.5e-46 189.5 96 93.8
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-46 188.7 96 93.8
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-46 188.7 96 93.8
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-46 188.7 96 93.8
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-46 188.7 96 93.8
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-46 188.7 96 93.8
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-46 188.7 96 93.8
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-46 188.7 96 93.8
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-46 188.7 96 93.8
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 2.6e-46 188.7 96 93.8
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 3.4e-46 188.3 93 94.6
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 5.9e-46 187.6 93 94.6
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 5.9e-46 187.6 93 94.6
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 5.9e-46 187.6 96 96.9
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 5.9e-46 187.6 96 91.7
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 7.7e-46 187.2 96 93.8
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 7.7e-46 187.2 96 93.8
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 7.7e-46 187.2 96 93.8
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 2.9e-45 185.3 96 91.7
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 3.8e-45 184.9 96 92.7
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 3.8e-45 184.9 96 91.7
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 5.0e-45 184.5 96 91.7
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 6.5e-45 184.1 96 91.7
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 8.5e-45 183.7 96 90.6
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 8.5e-45 183.7 96 88.5
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 8.5e-45 183.7 95 89.5
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 8.5e-45 183.7 95 89.5
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 8.5e-45 183.7 96 89.6
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 1.4e-44 183.0 96 89.6
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 1.4e-44 183.0 93 92.5
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.4e-44 183.0 96 89.6
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 2.5e-44 182.2 96 88.5
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 2.5e-44 182.2 96 90.6
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.5e-44 181.0 96 90.6
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 7.2e-44 180.6 93 90.3
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 7.2e-44 180.6 93 90.3
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 9.4e-44 180.3 96 88.5
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 1.2e-43 179.9 93 91.4
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.6e-43 179.5 96 87.5
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 2.7e-43 178.7 93 92.5
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 2.7e-43 178.7 96 87.5
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 4.6e-43 177.9 93 92.5
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 7.9e-43 177.2 96 88.5
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 1.0e-42 176.8 96 89.6
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 1.4e-42 176.4 96 85.4
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.4e-42 176.4 116 74.1
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.0e-42 175.3 93 87.1
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 3.0e-42 175.3 93 87.1
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.0e-42 175.3 93 87.1
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 3.9e-42 174.9 96 88.5
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 5.1e-42 174.5 96 86.5
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.7e-42 174.1 93 88.2
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.7e-42 174.1 93 88.2
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.7e-42 174.1 93 88.2
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.7e-42 174.1 93 88.2
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.7e-42 174.1 93 88.2
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 1.1e-41 173.3 89 89.9
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 1.5e-41 172.9 96 87.5
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 1.5e-41 172.9 96 87.5
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 1.5e-41 172.9 96 87.5
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-41 172.9 96 87.5
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-41 172.9 96 87.5
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-41 172.9 96 87.5
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 4.3e-41 171.4 96 86.5
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 5.7e-41 171.0 96 86.5
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 5.7e-41 171.0 97 83.5
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.4e-41 170.6 93 87.1
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 9.7e-41 170.2 96 86.5
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 9.7e-41 170.2 96 86.5
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 9.7e-41 170.2 96 86.5
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 9.7e-41 170.2 96 86.5
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 9.7e-41 170.2 96 86.5
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 9.7e-41 170.2 96 86.5
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 1.3e-40 169.9 96 85.4
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.7e-40 169.5 91 85.7
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 1.7e-40 169.5 93 87.1
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 2.2e-40 169.1 93 84.9
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 6.3e-40 167.5 95 85.3
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 6.3e-40 167.5 87 92.0
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 8.2e-40 167.2 93 86.0
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 8.2e-40 167.2 96 86.5
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 5.3e-39 164.5 93 89.2
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.7e-37 159.5 86 87.2
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.0e-37 157.9 86 86.0
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 1.1e-36 156.8 96 81.2
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.1e-36 156.8 96 76.0
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.1e-36 156.8 96 76.0
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.1e-36 156.8 96 76.0
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 1.1e-36 156.8 96 76.0
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 2.5e-36 155.6 95 78.9
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.5e-36 155.6 88 85.2
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 7.2e-36 154.1 96 75.0
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.7e-35 152.1 88 80.7
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 2.7e-35 152.1 87 87.4
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 3.9e-34 148.3 86 86.0
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 1.5e-33 146.4 95 74.7
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-33 145.2 84 85.7
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.7e-32 142.9 85 80.0
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 2.6e-30 135.6 81 80.2
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.2e-29 132.5 82 78.0
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.2e-29 132.5 82 78.0
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.2e-29 132.5 82 78.0
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.2e-29 132.5 82 78.0
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.2e-29 132.5 82 78.0
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.8e-29 131.7 76 81.6
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.8e-29 131.7 76 81.6
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.8e-29 131.7 76 81.6
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.8e-29 131.7 76 81.6
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.8e-29 131.7 76 81.6
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.5e-28 129.8 96 69.8
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.2e-27 126.7 68 85.3
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 2.1e-27 125.9 94 67.0
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 4.7e-27 124.8 68 82.4
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 8.8e-26 120.6 102 61.8
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 2.2e-24 115.9 66 78.8
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.8e-24 115.5 64 81.2
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 6.3e-24 114.4 59 88.1
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 6.3e-24 114.4 64 87.5
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 9.1e-23 110.5 61 86.9
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 1.7e-21 106.3 96 52.1
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.7e-21 106.3 93 61.3
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.8e-21 105.1 78 67.9
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.1e-20 103.6 62 77.4
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 1.5e-20 103.2 62 82.3
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 2.5e-20 102.4 59 79.7
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 7.2e-20 100.9 64 78.1
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 1.6e-19 99.8 99 51.5
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 3.6e-19 98.6 55 87.3
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 6.1e-19 97.8 61 80.3
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 6.1e-19 97.8 71 64.8
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 1.0e-18 97.1 52 86.5
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 2.3e-18 95.9 100 49.0
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.0e-18 95.1 53 83.0
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.0e-18 95.1 53 83.0
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 3.4e-17 92.0 97 49.5
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 4.4e-17 91.7 84 59.5
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 1.7e-16 89.7 52 78.8
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 2.8e-16 89.0 49 87.8
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 3.7e-16 88.6 57 82.5
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 4.8e-16 88.2 44 88.6
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.1e-15 87.0 46 84.8
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 2.7e-14 82.4 42 90.5
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 5.9e-14 81.3 86 52.3
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.0e-13 80.5 94 53.2
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.0e-13 80.5 41 95.1
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 8.5e-13 77.4 46 69.6
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 1.5e-12 76.6 49 75.5
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 2.5e-12 75.9 87 43.7
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 4.2e-12 75.1 49 73.5
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 6.1e-11 71.2 49 73.5
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 8.0e-11 70.9 33 93.9
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 8.0e-11 70.9 33 93.9
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 1.4e-10 70.1 36 88.9
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.5e-09 66.6 37 73.0
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 3.4e-09 65.5 29 93.1
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 7.5e-09 64.3 36 88.9
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 7.5e-09 64.3 34 91.2
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 3.7e-08 62.0 35 77.1
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 3.7e-08 62.0 36 77.8
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.4e-07 58.2 86 41.9
FAN07G1499 Fragaria x ananassa HOM05D000806 ORTHO05D007429 9.2e-07 57.4 54 53.7


User provided reference genes

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