Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 1.1e-226 789.6 395 100.0
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 5.9e-193 677.6 406 84.0
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 5.4e-186 654.4 394 83.0
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.5e-183 646.4 406 80.3
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 3.1e-181 638.6 394 81.5
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 4.2e-122 442.2 416 56.0
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 8.8e-120 434.5 397 56.7
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 4.8e-118 428.7 414 55.8
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 3.2e-114 416.0 398 54.5
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 2.7e-113 412.9 433 51.0
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 6.1e-113 411.8 330 60.6
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 1.4e-112 410.6 335 60.6
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 3.9e-112 409.1 422 51.2
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 2.0e-111 406.8 394 53.0
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 3.7e-110 402.5 420 53.6
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 6.3e-110 401.7 391 52.4
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 6.3e-110 401.7 393 51.7
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 4.1e-109 399.1 420 50.2
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 5.3e-109 398.7 345 57.7
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 7.0e-109 398.3 404 53.2
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.2e-108 397.5 417 49.4
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 3.5e-108 396.0 358 55.9
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 4.5e-108 395.6 409 52.6
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.0e-107 394.4 409 52.6
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 1.3e-107 394.0 393 50.6
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 2.9e-107 392.9 316 59.8
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.9e-107 392.9 267 70.8
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 5.5e-106 388.7 420 47.9
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 7.2e-106 388.3 420 49.8
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.2e-105 387.5 410 52.2
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 1.2e-105 387.5 409 51.6
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 2.1e-105 386.7 423 47.3
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 3.6e-105 386.0 423 47.0
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 8.0e-105 384.8 409 51.3
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 1.0e-104 384.4 393 54.7
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 6.7e-104 381.7 341 56.3
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 6.7e-104 381.7 326 56.4
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 1.2e-103 380.9 368 52.4
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 4.4e-103 379.0 395 50.4
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.7e-103 377.9 388 51.8
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 1.3e-102 377.5 413 49.9
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.3e-102 377.5 239 69.9
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 2.2e-102 376.7 407 49.9
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 4.8e-102 375.6 239 69.9
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 6.3e-102 375.2 271 63.8
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 3.1e-101 372.9 343 55.1
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.1e-101 371.3 356 53.4
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.6e-100 370.5 404 49.5
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.6e-100 370.5 356 53.1
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 1.6e-100 370.5 394 48.5
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 2.0e-100 370.2 340 51.5
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 4.5e-100 369.0 337 55.8
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 5.9e-100 368.6 444 46.2
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 7.7e-100 368.2 311 57.2
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.0e-99 367.9 394 47.2
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 1.3e-99 367.5 394 48.2
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 2.2e-99 366.7 407 47.9
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 6.5e-99 365.2 396 47.2
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 7.2e-98 361.7 392 46.9
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 2.7e-97 359.8 319 54.9
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 3.6e-97 359.4 413 47.0
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 3.6e-97 359.4 398 49.5
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 1.0e-96 357.8 411 47.4
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 4.0e-96 355.9 382 46.9
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 6.8e-96 355.1 329 52.0
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 1.5e-95 354.0 401 48.6
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 2.0e-95 353.6 314 52.5
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 7.5e-95 351.7 339 53.1
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 1.7e-94 350.5 324 51.2
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.2e-94 350.1 398 47.2
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 3.7e-94 349.4 400 47.2
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 8.3e-94 348.2 398 48.5
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 3.1e-93 346.3 361 49.9
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 1.2e-92 344.4 414 45.7
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 1.2e-92 344.4 322 52.2
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 2.0e-92 343.6 255 59.6
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 3.5e-92 342.8 406 50.0
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 1.0e-91 341.3 322 53.7
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.7e-91 340.5 406 50.0
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.7e-91 340.5 419 46.5
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 2.9e-91 339.7 395 46.6
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 7.2e-90 335.1 386 45.1
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 7.2e-90 335.1 404 46.5
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 8.0e-89 331.6 406 49.3
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.8e-88 330.5 401 49.1
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 1.8e-88 330.5 389 47.0
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 2.3e-88 330.1 386 50.5
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 5.2e-88 328.9 395 45.8
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.6e-87 326.6 418 45.0
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 3.4e-87 326.2 397 45.3
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 9.8e-87 324.7 340 50.9
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 2.2e-86 323.6 375 50.9
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 2.2e-86 323.6 399 48.4
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 8.3e-86 321.6 368 50.5
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 3.1e-85 319.7 260 58.1
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 7.0e-85 318.5 435 45.5
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 1.2e-84 317.8 431 46.2
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 1.3e-83 314.3 341 49.6
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 2.3e-83 313.5 396 48.0
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 2.3e-83 313.5 400 42.8
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 8.0e-81 305.1 270 54.8
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 1.8e-80 303.9 280 54.3
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 5.8e-79 298.9 376 46.0
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 1.9e-74 283.9 434 41.5
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 3.6e-73 279.6 316 47.5
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 8.0e-73 278.5 200 62.0
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.2e-71 274.6 437 37.1
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 9.8e-71 271.6 416 39.2
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 6.4e-70 268.9 348 45.7
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 3.2e-69 266.5 395 40.3
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.0e-67 261.5 366 44.3
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 3.0e-67 260.0 435 38.2
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.5e-66 257.7 368 40.2
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 2.5e-66 256.9 250 48.8
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 1.1e-64 251.5 326 44.8
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 4.4e-63 246.1 300 47.7
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 5.8e-63 245.7 183 60.1
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.1e-61 241.5 240 47.9
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.9e-61 240.7 184 62.5
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.4e-56 224.6 343 41.7
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.2e-55 221.5 314 43.9
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 2.0e-55 220.7 312 40.7
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 3.5e-52 209.9 395 34.7
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 1.3e-51 208.0 302 42.4
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 9.0e-48 195.3 133 63.9
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.1e-45 188.3 293 40.3
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 3.4e-39 166.8 183 43.7
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 4.2e-37 159.8 221 46.2
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.2e-37 159.8 218 42.2
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 2.0e-31 141.0 182 44.0
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.9e-22 109.8 158 39.9
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 8.4e-22 109.0 125 44.8
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.1e-18 98.6 114 41.2
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 1.9e-18 97.8 81 60.5
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 1.1e-16 92.0 65 55.4
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 4.1e-16 90.1 372 28.2
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 5.3e-16 89.7 100 52.0
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 5.3e-16 89.7 67 52.2
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 6.9e-16 89.4 72 52.8
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 1.3e-06 58.5 87 35.6


User provided reference genes

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