Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 5.7e-278 960.3 493 100.0
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 6.0e-227 790.8 496 82.3
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 2.0e-222 775.8 495 81.0
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 2.3e-218 762.3 447 86.6
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 8.8e-202 707.2 477 75.1
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 1.7e-200 703.0 445 79.3
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 1.7e-200 703.0 503 72.6
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 2.8e-200 702.2 492 74.8
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 6.3e-200 701.0 492 74.0
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.1e-199 700.3 493 73.4
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 1.1e-199 700.3 486 74.5
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 1.4e-199 699.9 497 73.0
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 1.8e-199 699.5 493 74.2
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 4.1e-199 698.4 451 79.4
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 4.1e-199 698.4 496 74.2
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 9.1e-199 697.2 496 72.6
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 1.2e-198 696.8 485 74.2
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 2.6e-198 695.7 466 75.5
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 3.4e-198 695.3 492 74.0
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 5.9e-198 694.5 498 72.9
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 2.9e-197 692.2 499 71.7
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 6.5e-197 691.0 498 73.9
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 1.4e-196 689.9 503 70.8
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 3.2e-196 688.7 502 72.5
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 4.2e-196 688.3 470 74.9
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 7.2e-196 687.6 464 75.0
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 1.2e-195 686.8 492 73.2
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 1.6e-195 686.4 503 71.2
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 1.6e-195 686.4 499 72.9
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 3.6e-195 685.3 486 71.8
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 3.6e-195 685.3 509 71.5
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 3.6e-195 685.3 487 72.9
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 2.3e-194 682.6 498 72.9
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 8.8e-194 680.6 487 71.3
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 2.0e-193 679.5 498 71.5
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 2.6e-193 679.1 473 72.7
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 7.4e-193 677.6 535 68.4
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.3e-192 676.8 457 75.5
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.7e-192 676.4 494 71.5
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 2.2e-192 676.0 487 71.7
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 2.4e-191 672.5 498 70.1
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 4.1e-191 671.8 499 70.7
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 4.1e-191 671.8 491 71.1
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 1.2e-190 670.2 494 70.2
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 1.5e-190 669.8 504 68.1
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 2.6e-190 669.1 488 70.9
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 4.5e-190 668.3 499 69.1
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.3e-189 666.8 433 78.5
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 5.0e-189 664.8 475 71.6
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 5.0e-189 664.8 487 70.8
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.5e-189 664.5 493 70.6
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 8.5e-189 664.1 484 70.7
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 1.9e-188 662.9 510 67.6
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 2.5e-188 662.5 477 71.3
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 3.2e-188 662.1 476 70.8
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 4.2e-188 661.8 493 69.4
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 9.4e-188 660.6 441 74.1
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 1.2e-187 660.2 432 76.6
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 1.6e-187 659.8 511 67.3
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 2.1e-187 659.4 460 72.0
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 2.7e-187 659.1 514 68.5
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 3.6e-187 658.7 453 73.5
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 8.0e-187 657.5 452 72.8
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 8.0e-187 657.5 499 70.1
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 1.5e-185 653.3 431 76.3
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 7.4e-185 651.0 487 69.4
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 1.3e-184 650.2 475 69.3
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 1.7e-184 649.8 500 68.2
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 2.2e-184 649.4 452 71.7
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 1.1e-183 647.1 478 69.9
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 1.4e-183 646.7 483 69.2
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 1.4e-183 646.7 478 69.7
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 1.4e-183 646.7 483 69.2
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 1.8e-183 646.4 461 72.0
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 5.3e-183 644.8 461 71.6
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 5.3e-183 644.8 456 72.4
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 5.3e-183 644.8 479 69.1
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 9.1e-183 644.0 478 69.7
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 9.1e-183 644.0 575 61.4
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 1.2e-182 643.7 435 74.7
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 2.0e-182 642.9 499 67.3
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 7.7e-182 641.0 460 72.0
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 7.7e-182 641.0 499 67.1
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 1.7e-181 639.8 475 70.3
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 2.2e-181 639.4 475 70.1
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 3.8e-181 638.6 492 67.9
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 8.5e-181 637.5 487 68.2
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.1e-180 637.1 489 68.9
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 2.5e-180 636.0 484 69.2
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 3.2e-180 635.6 435 73.1
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 5.5e-180 634.8 453 71.7
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 5.5e-180 634.8 453 71.7
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.2e-179 633.6 520 65.6
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 1.2e-179 633.6 433 74.1
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 2.7e-179 632.5 476 68.1
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 1.8e-178 629.8 470 70.0
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 2.3e-178 629.4 466 69.5
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 4.4e-177 625.2 441 70.1
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 1.1e-175 620.5 505 64.4
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 4.1e-175 618.6 433 73.0
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 7.7e-174 614.4 499 65.5
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.9e-173 612.5 442 68.6
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 1.0e-170 604.0 504 64.9
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 1.9e-164 583.2 455 65.1
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 1.8e-162 576.6 438 65.8
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 2.0e-161 573.2 447 67.8
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 5.4e-159 565.1 482 59.8
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 3.5e-158 562.4 477 60.4
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 6.8e-154 548.1 478 61.9
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 3.6e-147 525.8 489 60.7
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 2.3e-146 523.1 336 78.6
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 1.3e-144 517.3 499 53.9
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.7e-144 516.9 373 68.9
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.5e-142 509.2 486 59.3
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 4.7e-139 498.8 443 61.6
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 6.2e-139 498.4 439 59.0
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 6.6e-133 478.4 420 61.4
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 2.4e-130 469.9 481 50.7
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 3.4e-129 466.1 527 49.3
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 5.6e-116 422.2 457 55.1
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.9e-106 388.7 255 75.7
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 1.2e-81 308.1 400 46.8
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 6.5e-80 302.4 429 39.2
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 2.0e-73 280.8 241 63.1
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 2.0e-73 280.8 225 60.9
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 1.1e-71 275.0 387 45.2
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 2.2e-67 260.8 259 57.5
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 2.4e-66 257.3 337 50.1
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 5.3e-66 256.1 174 73.0
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 4.5e-65 253.1 468 33.5
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 8.3e-59 232.3 287 41.8
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 1.3e-51 208.4 172 66.9
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 1.7e-48 198.0 397 35.5
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 4.0e-37 160.2 131 64.9
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 2.0e-36 157.9 152 56.6
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.4e-36 157.1 96 78.1
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 8.1e-22 109.4 83 66.3
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 8.1e-22 109.4 68 76.5
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 2.3e-21 107.8 57 89.5
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 4.9e-19 100.1 69 66.7
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 9.2e-18 95.9 107 51.4
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 2.7e-17 94.4 86 59.3
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 1.0e-16 92.4 127 45.7
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 1.4e-13 82.0 64 64.1
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 1.2e-12 79.0 73 63.0
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 9.9e-12 75.9 49 73.5
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 9.9e-12 75.9 49 73.5


User provided reference genes

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