Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 2444.5 1317 100.0
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 2270.0 1317 92.7
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 2216.0 1317 91.2
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 2212.6 1365 88.9
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 2167.9 1317 85.1
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 2139.4 1303 85.3
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 2106.3 1317 82.9
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 2094.3 1317 82.8
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 2042.7 1317 80.8
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1998.8 1317 79.0
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1965.7 1321 79.0
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1956.4 1549 69.5
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1942.9 1317 76.8
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1939.9 1317 77.5
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1936.8 1317 77.4
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1934.8 1317 77.3
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1932.5 1317 77.4
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1926.0 1317 76.4
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1917.1 1436 72.2
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1914.4 1317 75.7
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1914.0 1317 76.0
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1909.4 1317 76.0
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1900.2 1317 74.9
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1891.3 1317 74.5
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1856.6 1317 72.8
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1856.6 1317 74.1
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1847.0 1317 72.8
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1841.2 1317 72.4
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1838.5 1318 74.4
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1837.8 1317 73.5
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1827.8 1317 72.9
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1826.6 1317 72.9
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1812.0 1317 73.7
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1803.9 1210 78.0
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1798.1 1317 71.9
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1792.7 1317 72.1
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1791.2 1317 71.9
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1790.4 1343 71.9
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1790.0 1317 71.1
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1781.5 1317 70.7
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1779.6 1325 72.4
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1778.1 1303 72.0
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1775.8 1317 72.2
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1775.4 1340 70.8
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1773.4 1317 69.9
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1766.9 1332 70.9
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1766.5 1332 70.9
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1766.5 1359 69.8
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1764.6 1317 69.4
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1760.0 1317 72.2
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1752.3 1318 69.7
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1749.9 1317 71.5
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1742.6 1317 72.3
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1741.5 1370 68.2
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1738.8 1210 75.8
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1737.6 1317 70.0
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1732.2 1317 70.5
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1731.5 1317 69.9
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1724.5 1261 72.8
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1698.7 1337 68.3
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1696.0 1401 66.0
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1659.0 1318 67.8
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1656.0 1318 67.7
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1652.5 1318 67.6
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1649.4 1318 68.2
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1647.5 1254 69.1
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1643.6 1303 67.4
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1641.3 1317 65.8
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1634.4 1317 67.3
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1625.9 1317 64.8
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1614.0 1303 66.3
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1607.0 1317 64.7
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1585.9 1317 63.6
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1578.1 1370 63.9
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1573.1 1303 65.2
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1276.2 1317 52.2
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1166.0 1062 58.7
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1154.4 1318 48.9
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1140.2 1025 62.3
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 0.0e+00 1110.1 900 66.2
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1107.0 1313 47.8
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.8e-311 1073.2 742 74.9
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 2.9e-308 1062.4 1053 55.6
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.4e-307 1060.1 759 73.0
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.1e-302 1043.9 888 61.8
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.9e-288 996.5 767 69.8
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 2.5e-288 996.1 1316 45.1
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 1.8e-286 989.9 669 79.2
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 2.1e-274 949.9 631 76.7
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 2.7e-274 949.5 631 76.7
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.0e-273 947.6 1108 51.3
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 1.1e-267 927.5 761 63.9
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 5.5e-267 925.2 1252 44.3
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 5.0e-260 902.1 790 64.1
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 6.5e-252 875.2 729 64.3
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.2e-251 871.7 631 76.1
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 2.6e-245 853.2 728 61.0
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.0e-240 837.0 594 74.7
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.0e-240 837.0 594 74.7
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.5e-232 810.8 558 77.2
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 1.1e-222 778.1 1270 39.2
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 3.6e-218 763.1 735 59.2
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 1.9e-198 697.6 593 64.9
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.3e-167 595.1 1368 33.2
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 1.7e-164 584.7 524 62.8
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 9.0e-161 572.4 350 84.9
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 9.6e-155 552.4 375 76.3
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 2.1e-146 524.6 444 64.6
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.3e-140 504.6 296 86.8
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 5.1e-140 503.4 457 61.3
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 9.0e-137 492.7 1331 30.9
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 5.9e-136 490.0 1379 30.5
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.1e-133 481.5 383 65.8
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.5e-123 448.7 1338 27.4
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 2.6e-123 448.0 394 62.4
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.8e-122 443.7 244 91.8
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.0e-121 439.9 222 97.7
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.9e-120 436.8 436 61.5
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 2.1e-117 428.3 264 84.5
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 2.4e-113 414.8 224 90.6
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 3.1e-113 414.5 853 38.1
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.2e-104 386.0 317 65.6
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 8.6e-95 353.2 187 94.1
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 3.7e-90 337.8 223 78.9
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 3.1e-84 318.2 227 70.5
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.6e-64 251.1 126 95.2
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 9.6e-54 216.9 140 81.4
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 9.9e-51 206.8 139 80.6
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 1.0e-47 196.8 192 57.3
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 2.1e-45 189.1 170 59.4
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 3.5e-40 171.8 165 57.6
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 4.3e-38 164.9 87 95.4
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 3.4e-35 155.2 106 77.4
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.9e-33 149.4 72 94.4
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 3.5e-32 145.2 114 65.8
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 6.0e-32 144.4 141 56.0
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 4.3e-30 138.3 225 41.8
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.0e-23 115.5 100 64.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.3e-21 110.2 64 85.9
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 4.8e-21 108.2 90 64.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 1.4e-20 106.7 64 79.7
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 2.4e-20 105.9 106 58.5
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 2.6e-14 85.9 131 41.2
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.7e-13 83.2 77 58.4
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 2.2e-13 82.8 265 28.7
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.1e-12 80.5 90 51.1
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 8.5e-10 70.9 63 65.1
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 1.6e-08 66.6 77 51.9
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 2.1e-08 66.2 61 65.6
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 2.7e-08 65.9 56 69.6
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 8.8e-07 60.8 33 90.9


User provided reference genes

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