Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 5.4e-160 567.8 324 100.0
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 2.5e-141 505.8 320 91.6
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 6.9e-139 497.7 325 89.8
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 3.0e-134 482.3 326 87.1
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.2e-132 476.1 300 92.3
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 1.1e-120 437.2 327 78.3
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.4e-120 436.8 295 83.4
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 9.4e-120 434.1 324 79.6
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 4.7e-119 431.8 328 77.4
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 3.9e-118 428.7 327 78.6
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 3.9e-118 428.7 324 77.5
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 5.2e-118 428.3 327 77.4
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.2e-118 428.3 326 78.8
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 3.3e-117 425.6 334 74.6
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 4.4e-117 425.2 327 76.1
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 5.7e-117 424.9 326 76.4
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 7.4e-117 424.5 326 76.7
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.3e-116 423.7 327 77.1
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.3e-116 423.7 327 76.1
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.7e-116 423.3 324 77.8
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.7e-116 423.3 327 75.5
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.7e-116 422.2 324 74.7
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 4.8e-116 421.8 329 74.2
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 8.2e-116 421.0 332 77.7
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 8.2e-116 421.0 324 74.4
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 1.1e-115 420.6 324 77.8
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.1e-115 420.6 321 77.6
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.8e-115 419.9 324 76.9
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.8e-115 419.9 330 76.7
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.4e-115 419.5 314 77.4
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 3.1e-115 419.1 324 75.9
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 4.1e-115 418.7 325 75.7
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 7.0e-115 417.9 326 74.8
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 9.1e-115 417.5 324 73.1
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 9.1e-115 417.5 324 79.3
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 9.1e-115 417.5 324 79.3
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 9.1e-115 417.5 333 76.0
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 9.1e-115 417.5 327 74.3
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 2.0e-114 416.4 328 73.8
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 4.5e-114 415.2 336 74.7
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 7.7e-114 414.5 318 75.8
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.0e-113 414.1 324 74.1
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 2.2e-113 412.9 324 73.1
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 3.8e-113 412.1 327 74.3
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 5.0e-113 411.8 326 72.7
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 5.0e-113 411.8 340 71.8
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 6.5e-113 411.4 325 73.8
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 8.5e-113 411.0 283 80.2
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 8.5e-113 411.0 327 73.1
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 1.1e-112 410.6 328 73.2
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 1.1e-112 410.6 337 72.7
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 1.5e-112 410.2 329 73.9
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.5e-112 410.2 327 74.6
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.5e-112 410.2 327 72.8
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.9e-112 409.8 324 74.7
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.9e-112 409.8 326 75.2
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.5e-112 409.5 333 73.6
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.5e-112 409.5 327 74.6
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 3.2e-112 409.1 330 73.3
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 7.2e-112 407.9 315 75.2
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 7.2e-112 407.9 315 75.2
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 7.2e-112 407.9 324 73.1
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 9.4e-112 407.5 324 75.9
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 1.2e-111 407.1 328 73.5
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.2e-111 407.1 322 75.2
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.6e-111 406.8 324 75.9
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 2.7e-111 406.0 319 76.2
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 3.6e-111 405.6 315 74.9
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 3.6e-111 405.6 315 74.9
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 3.6e-111 405.6 315 75.2
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 3.6e-111 405.6 305 77.0
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 4.7e-111 405.2 324 73.5
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 4.7e-111 405.2 325 75.1
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 4.7e-111 405.2 302 77.2
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.1e-111 404.8 338 72.5
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 6.1e-111 404.8 338 72.5
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 8.0e-111 404.4 327 74.3
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 8.0e-111 404.4 331 71.3
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 8.0e-111 404.4 329 74.8
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 8.0e-111 404.4 361 68.7
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.0e-110 404.1 328 73.2
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.4e-110 403.7 329 73.6
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 1.4e-110 403.7 326 73.0
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.4e-110 403.7 335 71.0
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 1.8e-110 403.3 327 74.9
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 2.3e-110 402.9 305 76.4
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 3.0e-110 402.5 326 73.9
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 4.0e-110 402.1 325 73.8
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.0e-110 402.1 327 74.6
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.0e-110 402.1 329 74.5
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 5.2e-110 401.7 331 73.4
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 6.8e-110 401.4 319 72.1
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 8.8e-110 401.0 328 74.1
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 8.8e-110 401.0 325 73.2
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 1.2e-109 400.6 325 73.5
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.2e-109 400.6 325 73.5
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.2e-109 400.6 327 72.8
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.5e-109 400.2 292 80.1
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 2.0e-109 399.8 277 80.9
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.0e-109 399.8 327 72.5
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 2.0e-109 399.8 326 73.6
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 7.5e-109 397.9 328 72.3
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.3e-108 397.1 327 72.8
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.3e-108 397.1 323 71.8
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 1.3e-108 397.1 290 77.9
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.7e-108 396.7 308 73.4
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.8e-108 396.0 295 75.9
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.8e-108 396.0 300 77.0
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 4.8e-108 395.2 299 76.9
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 4.8e-108 395.2 321 72.3
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 8.3e-108 394.4 322 72.7
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.1e-107 394.0 322 72.7
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.1e-107 394.0 322 72.7
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.4e-107 393.7 327 71.9
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-107 393.3 322 72.4
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.8e-107 393.3 322 72.4
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.4e-107 392.9 314 73.9
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 2.4e-107 392.9 380 63.9
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 3.1e-107 392.5 326 71.8
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 4.1e-107 392.1 311 72.7
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 5.3e-107 391.7 324 71.3
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 7.0e-107 391.3 319 72.7
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 9.1e-107 391.0 327 71.3
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 9.1e-107 391.0 325 72.6
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.6e-106 390.2 259 83.8
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 3.5e-106 389.0 309 76.7
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 7.7e-106 387.9 326 72.1
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.9e-105 386.0 324 70.7
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 3.8e-105 385.6 326 71.2
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 8.5e-105 384.4 304 73.4
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.8e-102 376.7 256 74.6
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 9.8e-101 370.9 301 74.4
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 9.8e-101 370.9 311 65.9
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 3.7e-100 369.0 261 81.6
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 3.7e-100 369.0 326 69.9
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 3.7e-100 369.0 298 72.8
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 5.4e-99 365.2 301 72.1
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 7.0e-99 364.8 310 70.0
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.2e-98 364.0 262 77.1
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.1e-96 357.5 329 66.0
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.9e-96 356.7 273 72.5
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.2e-96 354.8 231 88.7
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.6e-95 353.6 319 67.7
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 9.8e-93 344.4 304 71.7
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 3.7e-92 342.4 231 83.5
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.4e-91 340.5 227 85.9
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 7.8e-90 334.7 336 65.2
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.7e-89 333.6 327 56.9
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.5e-85 320.5 308 62.0
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.9e-83 313.5 358 58.4
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 1.2e-82 310.8 318 58.2
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 3.6e-79 299.3 271 63.1
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.8e-78 297.0 250 60.4
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.9e-75 287.0 250 57.6
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 3.2e-75 286.2 239 73.2
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 7.1e-75 285.0 196 84.2
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 2.3e-73 280.0 261 70.5
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.5e-72 277.3 257 58.8
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 1.9e-72 276.9 252 73.4
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.3e-68 264.2 235 74.5
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 1.1e-59 234.6 275 46.5
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 3.3e-56 223.0 267 49.4
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 4.3e-56 222.6 150 74.0
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.2e-52 210.3 125 81.6
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 1.2e-50 204.5 150 70.7
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.7e-50 203.4 124 80.6
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.2e-45 188.0 169 73.4
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 8.4e-44 181.8 163 74.2
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.8e-39 166.0 129 69.8
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 3.9e-33 146.4 120 65.0
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.3e-32 143.3 261 38.3
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 2.8e-31 140.2 86 77.9
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.8e-31 140.2 108 75.9
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 2.8e-31 140.2 126 62.7
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 3.3e-24 116.7 76 73.7
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 3.1e-22 110.2 158 55.1
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 2.3e-17 94.0 159 52.2
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.1e-16 91.7 107 63.6
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.0e-16 90.9 83 79.5
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 3.3e-16 90.1 122 48.4
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 3.8e-12 76.6 93 47.3
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 4.1e-06 56.6 76 35.5
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 7.0e-06 55.8 37 78.4


User provided reference genes

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