Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026005 Sechium edule HOM05D003034 ORTHO05D003815 3.4e-92 341.7 175 100.0
CsaV3_2G008750 Cucumis sativus L. HOM05D003034 ORTHO05D003815 7.0e-45 184.5 294 44.2
ClCG11G011740 Citrullus lanatus HOM05D003034 ORTHO05D003815 2.0e-44 183.0 294 44.6
MELO3C003973.2 Cucumis melo HOM05D003034 ORTHO05D003815 6.6e-43 177.9 294 43.2
MELO3C004580.2 Cucumis melo HOM05D003034 ORTHO05D003815 9.5e-42 174.1 296 42.6
GSVIVG01015321001 Vitis vinifera HOM05D003034 ORTHO05D003815 1.6e-41 173.3 230 47.8
Sed0020635 Sechium edule HOM05D003034 ORTHO05D003815 3.0e-40 169.1 294 41.5
CsaV3_2G002010 Cucumis sativus L. HOM05D003034 ORTHO05D003815 6.8e-40 167.9 296 41.9
ClCG11G002250 Citrullus lanatus HOM05D003034 ORTHO05D003815 2.4e-37 159.5 295 40.3
CANSAT56G3645 Cannabis sativa HOM05D003034 ORTHO05D003815 5.9e-36 154.8 301 37.5
MBI01_g18395_MAGBIO Magnolia biondii HOM05D003034 ORTHO05D003815 7.8e-36 154.5 291 38.1
TAR383G0759 Trochodendron aralioides HOM05D003034 ORTHO05D003815 1.5e-34 150.2 294 38.8
CiPaw.05G159100 Carya illinoinensis HOM05D003034 ORTHO05D003815 1.9e-34 149.8 294 37.4
Lj3g0024359 Lotus japonicus HOM05D003034 ORTHO05D003815 2.5e-34 149.4 292 38.4
arahy.Tifrunner.gnm1.ann1.SJ5F17 Arachis hypogaea HOM05D003034 ORTHO05D003815 4.3e-34 148.7 297 37.7
Lj7P662T23 Lonicera japonica HOM05D003034 ORTHO05D003815 4.3e-34 148.7 261 40.2
TAR626G0953 Trochodendron aralioides HOM05D003034 ORTHO05D003815 7.3e-34 147.9 294 37.8
arahy.Tifrunner.gnm1.ann1.FQ27XI Arachis hypogaea HOM05D003034 ORTHO05D003815 1.2e-33 147.1 297 37.4
arahy.Tifrunner.gnm1.ann1.H9HV5G Arachis hypogaea HOM05D003034 ORTHO05D003815 1.2e-33 147.1 294 38.1
Eucgr.C03783 Eucalyptus grandis HOM05D003034 ORTHO05D003815 1.2e-33 147.1 295 38.3
Cfa003200 Carpinus fangiana HOM05D003034 ORTHO05D003815 2.8e-33 146.0 295 36.9
Prupe.6G190500 Prunus persica HOM05D003034 ORTHO05D003815 2.8e-33 146.0 293 37.2
CiPaw.03G226500 Carya illinoinensis HOM05D003034 ORTHO05D003815 3.6e-33 145.6 294 36.7
TWI63G1404 Tripterygium wilfordii HOM05D003034 ORTHO05D003815 3.6e-33 145.6 292 37.3
arahy.Tifrunner.gnm1.ann1.Q11F98 Arachis hypogaea HOM05D003034 ORTHO05D003815 4.7e-33 145.2 294 37.8
Lalb_Chr14g0364221 Lupinus albus HOM05D003034 ORTHO05D003815 4.7e-33 145.2 293 38.9
Lj3g0026495 Lotus japonicus HOM05D003034 ORTHO05D003815 6.2e-33 144.8 295 38.3
Lalb_Chr14g0371801 Lupinus albus HOM05D003034 ORTHO05D003815 1.0e-32 144.1 293 38.6
PGR102G1252 Punica granatum HOM05D003034 ORTHO05D003815 1.0e-32 144.1 303 36.6
Thecc.09G102800 Theobroma cacao HOM05D003034 ORTHO05D003815 1.0e-32 144.1 294 38.1
RcHm_v2.0_Chr2g0091531 Rosa chinensis HOM05D003034 ORTHO05D003815 1.8e-32 143.3 278 37.8
Dinv41659 Davidia involucrata HOM05D003034 ORTHO05D003815 2.3e-32 142.9 292 37.7
COL.COLO4_34776 Corchorus olitorius HOM05D003034 ORTHO05D003815 3.1e-32 142.5 167 51.5
Gohir.A06G066400 Gossypium hirsutum HOM05D003034 ORTHO05D003815 3.1e-32 142.5 167 52.1
Aqoxy5G03604 Aquilegia oxysepala HOM05D003034 ORTHO05D003815 6.8e-32 141.4 296 37.8
Gohir.D06G064900 Gossypium hirsutum HOM05D003034 ORTHO05D003815 8.9e-32 141.0 167 51.5
Gorai.010G076000 Gossypium raimondii HOM05D003034 ORTHO05D003815 8.9e-32 141.0 167 51.5
Ciclev10011323m.g Citrus clementina HOM05D003034 ORTHO05D003815 1.2e-31 140.6 298 37.9
Manes.16G110600 Manihot esculenta HOM05D003034 ORTHO05D003815 1.5e-31 140.2 167 50.9
Dinv36700 Davidia involucrata HOM05D003034 ORTHO05D003815 2.6e-31 139.4 292 37.0
Potri.018G086100 Populus trichocarpa HOM05D003034 ORTHO05D003815 2.6e-31 139.4 167 50.3
Sc18g0001400 Simmondsia chinensis HOM05D003034 ORTHO05D003815 2.6e-31 139.4 292 37.0
Manes.03G025400 Manihot esculenta HOM05D003034 ORTHO05D003815 3.4e-31 139.0 294 37.1
Cpa.g.sc80.4 Carica papaya HOM05D003034 ORTHO05D003815 4.4e-31 138.7 295 37.3
Os02g0759800 Oryza sativa ssp. japonica HOM05D003034 ORTHO05D003815 7.5e-31 137.9 167 50.9
FAN28G1237 Fragaria x ananassa HOM05D003034 ORTHO05D003815 1.7e-30 136.7 275 36.4
CDE04G2309 Ceratophyllum demersum HOM05D003034 ORTHO05D003815 3.7e-30 135.6 291 36.4
Atru.chr7.1439 Acer truncatum HOM05D003034 ORTHO05D003815 4.9e-30 135.2 167 50.3
Atru.chr3.2836 Acer truncatum HOM05D003034 ORTHO05D003815 6.4e-30 134.8 167 50.3
Duzib150G0860 Durio zibethinus HOM05D003034 ORTHO05D003815 6.4e-30 134.8 294 37.1
MD15G1194300 Malus domestica HOM05D003034 ORTHO05D003815 6.4e-30 134.8 296 37.2
Duzib187G0042 Durio zibethinus HOM05D003034 ORTHO05D003815 2.4e-29 132.9 294 36.4
QL07p045689 Quercus lobata HOM05D003034 ORTHO05D003815 4.1e-29 132.1 292 35.3
CSS0003359 Camellia sinensis var. sinensis HOM05D003034 ORTHO05D003815 7.0e-29 131.3 292 34.9
CSS0030998 Camellia sinensis var. sinensis HOM05D003034 ORTHO05D003815 7.0e-29 131.3 292 34.9
Lsat_1_v5_gn_8_96740 Lactuca sativa HOM05D003034 ORTHO05D003815 7.0e-29 131.3 292 36.3
PSO541G1919 Papaver somniferum HOM05D003034 ORTHO05D003815 9.2e-29 131.0 295 38.0
PSO675G1466 Papaver somniferum HOM05D003034 ORTHO05D003815 9.2e-29 131.0 295 38.0
Potri.006G163700 Populus trichocarpa HOM05D003034 ORTHO05D003815 1.2e-28 130.6 294 36.1
Ca_00851_v3 Cicer arietinum L. HOM05D003034 ORTHO05D003815 1.6e-28 130.2 299 36.1
HanXRQChr12g0355101 Helianthus annuus HOM05D003034 ORTHO05D003815 1.6e-28 130.2 153 52.9
Hma1.2p1_0155F.1_g068240 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 1.6e-28 130.2 292 35.3
FAN23G2752 Fragaria x ananassa HOM05D003034 ORTHO05D003815 2.0e-28 129.8 292 34.2
Ah.13g075360 Amaranthus hybridus HOM05D003034 ORTHO05D003815 2.7e-28 129.4 152 51.3
FvH4_1g05870 Fragaria vesca HOM05D003034 ORTHO05D003815 3.5e-28 129.0 292 34.2
FAN19G3151 Fragaria x ananassa HOM05D003034 ORTHO05D003815 3.5e-28 129.0 292 34.2
FAN26G1867 Fragaria x ananassa HOM05D003034 ORTHO05D003815 3.5e-28 129.0 292 33.9
FAN26G3466 Fragaria x ananassa HOM05D003034 ORTHO05D003815 4.6e-28 128.6 292 33.9
Lsat_1_v5_gn_8_96801 Lactuca sativa HOM05D003034 ORTHO05D003815 4.6e-28 128.6 283 36.0
VMungo0464G1299 Vigna mungo HOM05D003034 ORTHO05D003815 6.0e-28 128.3 178 46.6
Ca_11222_v3 Cicer arietinum L. HOM05D003034 ORTHO05D003815 7.8e-28 127.9 297 36.0
THA.LOC104814568 Tarenaya hassleriana HOM05D003034 ORTHO05D003815 7.8e-28 127.9 305 36.4
ATR0767G058 Amborella trichopoda HOM05D003034 ORTHO05D003815 1.3e-27 127.1 295 34.2
Phvul.004G176500 Phaseolus vulgaris HOM05D003034 ORTHO05D003815 1.3e-27 127.1 178 46.6
Psat6g027040 Pisum sativum HOM05D003034 ORTHO05D003815 1.3e-27 127.1 301 35.9
Sabra18G0074400 Salix brachista HOM05D003034 ORTHO05D003815 1.7e-27 126.7 294 35.0
Cc06_g10290 Coffea canephora HOM05D003034 ORTHO05D003815 2.3e-27 126.3 152 50.7
SHI17238 Sapria himalayana HOM05D003034 ORTHO05D003815 2.3e-27 126.3 299 35.5
Aa31LG4G7190 Aethionema arabicum HOM05D003034 ORTHO05D003815 3.0e-27 125.9 296 33.8
Haze_25807 Corylus avellana HOM05D003034 ORTHO05D003815 3.9e-27 125.6 291 34.0
CANSAT56G0252 Cannabis sativa HOM05D003034 ORTHO05D003815 6.6e-27 124.8 237 39.7
ATR0705G182 Amborella trichopoda HOM05D003034 ORTHO05D003815 8.6e-27 124.4 294 34.0
ECA234G3735 Erigeron canadensis HOM05D003034 ORTHO05D003815 8.6e-27 124.4 153 50.3
Medtr2g030450 Medicago truncatula HOM05D003034 ORTHO05D003815 8.6e-27 124.4 302 35.4
TPR.G26332 Trifolium pratense HOM05D003034 ORTHO05D003815 8.6e-27 124.4 300 35.3
HPP92_020241 Vanilla planifolia HOM05D003034 ORTHO05D003815 8.6e-27 124.4 285 35.8
Glyma.01G008600 Glycine max HOM05D003034 ORTHO05D003815 1.5e-26 123.6 178 46.1
Glyma.16G077700 Glycine max HOM05D003034 ORTHO05D003815 1.5e-26 123.6 178 46.1
Actinidia03787 Actinidia chinensis HOM05D003034 ORTHO05D003815 1.9e-26 123.2 267 35.6
DCAR_028668 Daucus carota HOM05D003034 ORTHO05D003815 2.5e-26 122.9 214 39.3
MSTRG.27345 Avicennia marina HOM05D003034 ORTHO05D003815 3.3e-26 122.5 290 35.2
MD02G1060800 Malus domestica HOM05D003034 ORTHO05D003815 4.3e-26 122.1 296 35.8
HanXRQChr08g0207631 Helianthus annuus HOM05D003034 ORTHO05D003815 5.6e-26 121.7 153 51.0
Zm00001eb193840 Zea mays HOM05D003034 ORTHO05D003815 7.3e-26 121.3 297 34.7
Oeu011147.2 Olea europaea HOM05D003034 ORTHO05D003815 9.5e-26 120.9 232 38.4
SEGI_22940 Sequoiadendron giganteum HOM05D003034 ORTHO05D003815 9.5e-26 120.9 152 48.0
Nn6g34053 Nelumbo nucifera HOM05D003034 ORTHO05D003815 1.2e-25 120.6 279 34.1
Sp5g32360 Schrenkiella parvula HOM05D003034 ORTHO05D003815 1.6e-25 120.2 295 34.9
PSO333G0016 Papaver somniferum HOM05D003034 ORTHO05D003815 2.1e-25 119.8 288 36.1
Prupe.7G222200 Prunus persica HOM05D003034 ORTHO05D003815 3.6e-25 119.0 293 34.5
BcaNung04773 Brassica carinata HOM05D003034 ORTHO05D003815 6.2e-25 118.2 296 35.8
BcaC08g47218 Brassica carinata HOM05D003034 ORTHO05D003815 1.1e-24 117.5 151 49.0
BolC6t40155H Brassica oleracea HOM05D003034 ORTHO05D003815 1.1e-24 117.5 151 49.0
PSO339G3427 Papaver somniferum HOM05D003034 ORTHO05D003815 1.1e-24 117.5 288 35.8
SalBow6G1785 Salvia bowleyana HOM05D003034 ORTHO05D003815 1.4e-24 117.1 296 33.4
C06p51340 Brassica napus HOM05D003034 ORTHO05D003815 1.8e-24 116.7 151 49.0
AUR62029022 Chenopodium quinoa HOM05D003034 ORTHO05D003815 1.8e-24 116.7 152 46.7
Oeu013765.3 Olea europaea HOM05D003034 ORTHO05D003815 2.3e-24 116.3 166 45.2
Migut.F00702 Erythranthe guttata HOM05D003034 ORTHO05D003815 3.1e-24 115.9 153 47.1
AL2G37350 Arabidopsis lyrata HOM05D003034 ORTHO05D003815 4.0e-24 115.5 294 33.7
ECA234G3488 Erigeron canadensis HOM05D003034 ORTHO05D003815 4.0e-24 115.5 298 34.9
Nitab4.5_0000571g0140 Nicotiana tabacum HOM05D003034 ORTHO05D003815 5.2e-24 115.2 152 47.4
Nitab4.5_0001364g0040 Nicotiana tabacum HOM05D003034 ORTHO05D003815 6.8e-24 114.8 150 47.3
A07p42740 Brassica napus HOM05D003034 ORTHO05D003815 8.9e-24 114.4 295 34.6
ECA247G1716 Erigeron canadensis HOM05D003034 ORTHO05D003815 8.9e-24 114.4 297 35.0
AUR62039009 Chenopodium quinoa HOM05D003034 ORTHO05D003815 1.2e-23 114.0 150 46.7
Actinidia32658 Actinidia chinensis HOM05D003034 ORTHO05D003815 1.5e-23 113.6 221 38.9
EL10Ac8g18404 Beta vulgaris HOM05D003034 ORTHO05D003815 1.5e-23 113.6 152 45.4
CBR_g39572 Chara braunii HOM05D003034 ORTHO05D000048 2.0e-23 113.2 153 45.8
AUR62010919 Chenopodium quinoa HOM05D003034 ORTHO05D003815 2.0e-23 113.2 150 46.0
AT1G77180 Arabidopsis thaliana HOM05D003034 ORTHO05D003815 3.4e-23 112.5 296 33.8
Thhalv10018295m.g Eutrema salsugineum HOM05D003034 ORTHO05D003815 3.4e-23 112.5 150 46.7
Nitab4.5_0001886g0070 Nicotiana tabacum HOM05D003034 ORTHO05D003815 4.4e-23 112.1 152 46.7
Solyc12g008370.3 Solanum lycopersicum HOM05D003034 ORTHO05D003815 4.4e-23 112.1 152 48.7
Sopen12g003330 Solanum pennellii HOM05D003034 ORTHO05D003815 4.4e-23 112.1 152 48.7
unitig_748.g6993 Utricularia gibba HOM05D003034 ORTHO05D003815 4.4e-23 112.1 153 46.4
BraA07t31796Z Brassica rapa HOM05D003034 ORTHO05D003815 5.8e-23 111.7 295 34.2
Nitab4.5_0001004g0210 Nicotiana tabacum HOM05D003034 ORTHO05D003815 7.5e-23 111.3 152 46.1
SGA_v2.0_scaffold2G00918 Striga asiatica HOM05D003034 ORTHO05D003815 7.5e-23 111.3 287 33.1
CARHR070650 Cardamine hirsuta HOM05D003034 ORTHO05D003815 1.3e-22 110.5 150 47.3
CAN.G1349.3 Capsicum annuum HOM05D003034 ORTHO05D003815 1.7e-22 110.2 154 46.8
Peaxi162Scf00463g00215 Petunia axillaris HOM05D003034 ORTHO05D003815 2.2e-22 109.8 150 45.3
Carub.0002s2406 Capsella rubella HOM05D003034 ORTHO05D003815 8.3e-22 107.8 150 44.0
AagrBONN_evm.TU.Sc2ySwM_344.799 Anthoceros agrestis HOM05D003034 ORTHO05D003815 1.4e-21 107.1 144 43.8
DCAR_019351 Daucus carota HOM05D003034 ORTHO05D003815 1.4e-21 107.1 287 33.4
QL12p007741 Quercus lobata HOM05D003034 ORTHO05D003815 1.9e-21 106.7 247 34.8
PGSC0003DMG400000364 Solanum tuberosum HOM05D003034 ORTHO05D003815 1.9e-21 106.7 155 47.7
Thecc.04G177800 Theobroma cacao HOM05D003034 ORTHO05D003815 3.2e-21 105.9 147 43.5
Thhalv10009601m.g Eutrema salsugineum HOM05D003034 ORTHO05D003815 9.2e-21 104.4 197 39.6
PSO017G0874 Papaver somniferum HOM05D003034 ORTHO05D003815 9.2e-21 104.4 104 55.8
BcaB05g25024 Brassica carinata HOM05D003034 ORTHO05D003815 2.1e-20 103.2 251 37.8
Pp3c12_6510 Physcomitrium patens HOM05D003034 ORTHO05D003815 3.5e-20 102.4 293 30.7
Mapoly0133s0002 Marchantia polymorpha HOM05D003034 ORTHO05D003815 1.7e-19 100.1 294 31.0
HanXRQChr06g0165831 Helianthus annuus HOM05D003034 ORTHO05D003815 8.6e-19 97.8 233 36.5
Carub.0006s0828 Capsella rubella HOM05D003034 ORTHO05D003815 3.3e-18 95.9 256 35.5
COL.COLO4_34758 Corchorus olitorius HOM05D003034 ORTHO05D003815 3.3e-18 95.9 196 38.8
QL05p029156 Quercus lobata HOM05D003034 ORTHO05D003815 7.3e-18 94.7 234 35.5
SMO358G0498 Selaginella moellendorffii HOM05D003034 ORTHO05D003815 2.1e-17 93.2 284 29.2
Ciclev10012059m.g Citrus clementina HOM05D003034 ORTHO05D003815 8.1e-17 91.3 109 50.5
Ciclev10012199m.g Citrus clementina HOM05D003034 ORTHO05D003815 8.1e-17 91.3 109 49.5
CARHR019020 Cardamine hirsuta HOM05D003034 ORTHO05D003815 8.9e-16 87.8 210 34.8
MD02G1060700 Malus domestica HOM05D003034 ORTHO05D003815 1.2e-15 87.4 210 35.7
Nitab4.5_0004962g0020 Nicotiana tabacum HOM05D003034 ORTHO05D003815 1.2e-15 87.4 156 41.7
A02p21160 Brassica napus HOM05D003034 ORTHO05D003815 2.6e-15 86.3 202 36.6
BraA02t07133Z Brassica rapa HOM05D003034 ORTHO05D003815 2.6e-15 86.3 202 36.6
PSO333G0001 Papaver somniferum HOM05D003034 ORTHO05D003815 5.8e-15 85.1 238 33.6
TPR.G35643 Trifolium pratense HOM05D002784 ORTHO05D003113 1.7e-14 83.6 117 43.6
RcHm_v2.0_Chr4g0445081 Rosa chinensis HOM05D003034 ORTHO05D003815 2.2e-14 83.2 108 42.6
AL1G30830 Arabidopsis lyrata HOM05D003034 ORTHO05D003815 4.9e-14 82.0 216 35.6
FvH4_4g35450 Fragaria vesca HOM05D003034 ORTHO05D003815 1.1e-13 80.9 121 40.5
FAN12G0026 Fragaria x ananassa HOM05D000251 ORTHO05D000414 1.1e-13 80.9 107 42.1
FAN17G1037 Fragaria x ananassa HOM05D003034 ORTHO05D003815 4.1e-13 79.0 151 39.1
MD02G1060600 Malus domestica HOM05D003034 ORTHO05D003815 5.4e-13 78.6 117 41.0
CDE02G1105 Ceratophyllum demersum HOM05D003034 ORTHO05D003815 9.2e-13 77.8 184 34.2
PGSC0003DMG400039821 Solanum tuberosum HOM05D003034 ORTHO05D003815 9.2e-13 77.8 208 36.1
C02p34310 Brassica napus HOM05D003034 ORTHO05D003815 2.7e-12 76.3 189 37.6
Os06g0218000 Oryza sativa ssp. japonica HOM05D003034 ORTHO05D003815 2.7e-12 76.3 220 32.7
RcHm_v2.0_Chr2g0091611 Rosa chinensis HOM05D003034 ORTHO05D003815 7.8e-12 74.7 274 30.7
Carub.0001s1804 Capsella rubella HOM05D003034 ORTHO05D003815 3.9e-11 72.4 114 43.0
Hma1.2p1_1041F.1_g251010 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 1.1e-10 70.9 72 52.8
Hma1.2p1_1041F.1_g251015 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 1.1e-10 70.9 72 52.8
Hma1.2p1_1041F.1_g251040 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 1.1e-10 70.9 72 52.8
Hma1.2p1_1041F.1_g251045 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 1.1e-10 70.9 72 52.8
Hma1.2p1_1161F.1_g262540 Hydrangea macrophylla HOM05D003034 ORTHO05D003815 1.1e-10 70.9 72 52.8
PRCOL_00001697 Prasinoderma coloniale HOM05D003034 ORTHO05D003815 3.3e-10 69.3 157 36.9
Peaxi162Scf00665g00023 Petunia axillaris HOM05D003034 ORTHO05D003815 7.3e-10 68.2 175 32.6
AUR62021432 Chenopodium quinoa HOM05D003034 ORTHO05D003815 1.6e-09 67.0 185 34.6
ECA233G3552 Erigeron canadensis HOM05D003034 ORTHO05D003815 1.6e-09 67.0 102 41.2
Solyc11g017220.1 Solanum lycopersicum HOM05D003034 ORTHO05D003815 2.0e-07 60.1 155 36.8
Sopen11g009120 Solanum pennellii HOM05D003034 ORTHO05D003815 2.0e-07 60.1 147 36.7
BolC2t09453H Brassica oleracea HOM05D003034 ORTHO05D003815 2.6e-07 59.7 158 34.2
Sp2g00740 Schrenkiella parvula HOM05D003034 ORTHO05D372034 9.9e-07 57.8 141 37.6
Oeu042904.1 Olea europaea HOM05D003034 ORTHO05D003815 1.3e-06 57.4 79 46.8
SMO271G0070 Selaginella moellendorffii HOM05D003034 ORTHO05D003815 1.7e-06 57.0 131 38.2
Nn2g11616 Nelumbo nucifera HOM05D003034 ORTHO05D003815 6.4e-06 55.1 67 53.7


User provided reference genes

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