Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 5.4e-263 911.0 671 100.0
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 3.2e-223 778.9 671 88.7
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 4.7e-222 775.0 671 88.7
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 6.2e-158 562.0 668 75.6
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 9.9e-156 554.7 602 78.2
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 2.2e-155 553.5 591 80.7
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 3.8e-155 552.7 598 80.4
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 8.4e-155 551.6 596 79.2
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 1.1e-154 551.2 596 79.2
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 1.3e-152 544.3 669 74.4
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 1.6e-150 537.3 591 80.5
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 4.0e-149 532.7 594 78.8
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 2.0e-148 530.4 591 80.2
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 2.6e-148 530.0 591 77.7
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 9.9e-148 528.1 675 72.3
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 2.9e-147 526.6 701 54.6
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 3.8e-147 526.2 591 76.3
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 4.9e-147 525.8 590 76.8
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 1.0e-144 518.1 562 82.9
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 3.0e-144 516.5 593 78.9
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 7.3e-143 511.9 664 72.6
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 4.6e-137 492.7 593 75.0
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 6.0e-137 492.3 590 76.1
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 5.1e-136 489.2 590 75.6
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 1.5e-135 487.6 589 74.5
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 1.9e-135 487.3 591 75.3
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 5.6e-135 485.7 663 69.4
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 7.4e-135 485.3 589 76.1
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 4.0e-133 479.6 533 81.4
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 5.3e-133 479.2 589 74.2
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 5.3e-133 479.2 589 71.0
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 6.9e-133 478.8 589 70.5
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 6.9e-133 478.8 651 71.0
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 1.2e-132 478.0 588 75.7
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 1.5e-132 477.6 589 72.2
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 3.4e-132 476.5 589 70.8
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 4.5e-132 476.1 591 77.2
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 7.6e-132 475.3 589 72.3
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 9.9e-132 474.9 589 74.5
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 2.2e-131 473.8 639 70.1
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 4.9e-131 472.6 668 67.8
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 4.2e-130 469.5 589 70.3
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 2.1e-129 467.2 589 72.0
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 7.9e-129 465.3 596 73.3
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 1.3e-128 464.5 586 75.3
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 8.7e-128 461.8 532 78.9
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 5.6e-127 459.1 617 68.4
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 2.8e-126 456.8 629 71.4
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 1.7e-123 447.6 590 71.0
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 2.9e-123 446.8 610 69.0
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 4.9e-123 446.0 592 69.9
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 1.6e-121 441.0 591 73.8
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 2.1e-121 440.7 633 61.0
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 2.5e-119 433.7 683 67.2
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 9.4e-114 415.2 573 74.5
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 2.1e-113 414.1 227 91.2
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 3.0e-112 410.2 630 68.4
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 3.0e-112 410.2 594 71.9
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 6.7e-112 409.1 581 69.2
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 6.3e-110 402.5 528 75.8
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 2.4e-109 400.6 579 71.3
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 4.5e-108 396.4 585 66.2
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 3.8e-107 393.3 584 72.4
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 5.0e-107 392.9 584 72.4
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 8.5e-107 392.1 532 75.0
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 2.0e-103 380.9 573 69.1
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 1.8e-101 374.4 587 69.2
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 1.3e-99 368.2 585 61.2
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 4.7e-97 359.8 591 62.9
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 6.7e-96 355.9 217 80.6
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 2.4e-93 347.4 591 62.4
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 1.1e-90 338.6 594 67.7
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 5.5e-90 336.3 553 67.8
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 1.6e-89 334.7 217 75.1
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 2.7e-89 334.0 227 72.2
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 5.2e-88 329.7 581 67.3
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 5.7e-87 326.2 586 65.0
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 9.7e-87 325.5 591 66.5
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 3.7e-86 323.6 562 43.8
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 5.3e-85 319.7 588 65.1
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 5.9e-84 316.2 221 70.6
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.4e-80 305.1 226 69.0
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.0e-80 303.9 198 75.3
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 8.3e-70 269.2 534 67.0
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 1.2e-68 265.4 210 73.3
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 1.6e-65 255.0 167 75.4
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 2.8e-57 227.6 489 68.3
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 4.7e-57 226.9 213 64.3
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 9.2e-53 212.6 213 46.9
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 8.9e-48 196.1 212 59.9
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 1.4e-45 188.7 288 48.3
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 6.0e-36 156.8 151 64.9
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 7.8e-36 156.4 110 69.1
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 6.6e-35 153.3 124 64.5
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.9e-34 151.8 155 61.9
Cpa.g.c42393 Carica papaya HOM05D007322 ORTHO05D009029 9.0e-32 142.9 103 68.9
ClCG10G013480 Citrullus lanatus HOM05D007322 ORTHO05D009029 4.4e-31 140.6 100 77.0
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 8.7e-19 99.8 73 63.0
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 3.7e-17 94.4 111 61.3
Peaxi162Scf00427g00004 Petunia axillaris HOM05D007322 ORTHO05D009029 2.0e-15 88.6 48 83.3
Pp3c24_4430 Physcomitrium patens HOM05D007322 ORTHO05D009029 2.6e-15 88.2 113 35.4
Medtr2g036560 Medicago truncatula HOM05D003056 ORTHO05D003422 7.4e-10 70.1 194 24.2
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 9.6e-10 69.7 177 26.0
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 8.2e-09 66.6 181 24.3
Pp3c4_14490 Physcomitrium patens HOM05D005862 ORTHO05D000003 1.1e-08 66.2 170 24.7
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 1.4e-08 65.9 72 45.8
Ca_02033_v3 Cicer arietinum L. HOM05D003056 ORTHO05D003422 1.8e-08 65.5 181 23.8
COL.COLO4_29977 Corchorus olitorius HOM05D003056 ORTHO05D003422 5.3e-08 63.9 177 24.9
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 9.0e-08 63.2 132 27.3
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 2.0e-07 62.0 177 24.3
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 3.4e-07 61.2 177 24.9
TPR.G20572 Trifolium pratense HOM05D003056 ORTHO05D003422 3.4e-07 61.2 172 23.8
Cfa013401 Carpinus fangiana HOM05D003056 ORTHO05D003422 5.8e-07 60.5 177 23.7
HanXRQChr07g0202171 Helianthus annuus HOM05D003056 ORTHO05D003422 5.8e-07 60.5 189 24.3
Sabra07G0055900 Salix brachista HOM05D000293 ORTHO05D009029 5.8e-07 60.5 62 48.4
Gohir.A05G004100 Gossypium hirsutum HOM05D003056 ORTHO05D003422 7.6e-07 60.1 177 23.2
Gohir.D05G004500 Gossypium hirsutum HOM05D003056 ORTHO05D003422 7.6e-07 60.1 177 23.2
Gorai.009G004300 Gossypium raimondii HOM05D003056 ORTHO05D003422 7.6e-07 60.1 177 23.2
Sabra17G0065200 Salix brachista HOM05D007322 ORTHO05D009029 7.6e-07 60.1 44 65.9
Haze_21943 Corylus avellana HOM05D003056 ORTHO05D003422 1.3e-06 59.3 177 23.7
Sed0009936 Sechium edule HOM05D003056 ORTHO05D003422 1.3e-06 59.3 177 27.7
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 1.7e-06 58.9 213 22.5
CsaV3_2G008490 Cucumis sativus L. HOM05D003056 ORTHO05D003422 1.7e-06 58.9 171 24.0
QL02p098354 Quercus lobata HOM05D003056 ORTHO05D003422 2.9e-06 58.2 177 23.2
Sopen07g006580 Solanum pennellii HOM05D003056 ORTHO05D003422 2.9e-06 58.2 177 24.3
PGSC0003DMG400004093 Solanum tuberosum HOM05D003056 ORTHO05D003422 5.0e-06 57.4 177 23.7
TPR.G37938 Trifolium pratense HOM05D005862 ORTHO05D007731 5.0e-06 57.4 132 25.8
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 6.5e-06 57.0 177 23.7
Solyc07g017760.1 Solanum lycopersicum HOM05D003056 ORTHO05D003422 6.5e-06 57.0 177 24.3
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 8.4e-06 56.6 144 26.4
CiPaw.08G035000 Carya illinoinensis HOM05D003056 ORTHO05D003422 8.4e-06 56.6 181 23.2
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 8.4e-06 56.6 118 27.1


User provided reference genes

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