Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 7.5e-49 196.8 96 100.0
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.9e-44 182.2 96 94.8
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 5.5e-44 180.6 96 93.8
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 1.2e-43 179.5 96 92.7
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 2.3e-42 175.3 96 90.6
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.5e-36 155.2 96 76.0
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.5e-36 155.2 96 76.0
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 7.3e-36 153.7 96 75.0
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 2.1e-35 152.1 96 74.0
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 2.1e-35 152.1 94 77.7
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 6.1e-35 150.6 95 72.6
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 6.1e-35 150.6 94 76.6
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.0e-34 149.8 97 76.3
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.4e-34 149.4 94 75.5
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 2.3e-34 148.7 85 81.2
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 2.3e-34 148.7 85 81.2
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 2.3e-34 148.7 94 75.5
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 3.1e-34 148.3 94 75.5
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 3.1e-34 148.3 94 75.5
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 3.1e-34 148.3 94 75.5
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 4.0e-34 147.9 95 73.7
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 5.2e-34 147.5 94 76.6
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 5.2e-34 147.5 94 76.6
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 5.2e-34 147.5 94 75.5
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 5.2e-34 147.5 96 74.0
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 6.8e-34 147.1 96 72.9
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 6.8e-34 147.1 94 75.5
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 6.8e-34 147.1 94 75.5
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 8.9e-34 146.7 96 74.0
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 8.9e-34 146.7 94 75.5
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 8.9e-34 146.7 94 74.5
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 8.9e-34 146.7 96 72.9
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.5e-33 146.0 94 75.5
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 1.5e-33 146.0 89 78.7
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 1.5e-33 146.0 94 74.5
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 2.0e-33 145.6 96 72.9
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 2.0e-33 145.6 90 75.6
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 2.0e-33 145.6 90 75.6
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 2.0e-33 145.6 94 75.5
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 2.6e-33 145.2 89 77.5
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 2.6e-33 145.2 89 78.7
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 2.6e-33 145.2 95 69.5
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 2.6e-33 145.2 94 73.4
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.6e-33 145.2 94 74.5
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 3.4e-33 144.8 94 74.5
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 5.8e-33 144.1 88 77.3
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 5.8e-33 144.1 90 75.6
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 5.8e-33 144.1 90 75.6
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 5.8e-33 144.1 94 72.3
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 7.5e-33 143.7 94 72.3
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 7.5e-33 143.7 94 72.3
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 7.5e-33 143.7 96 69.8
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 7.5e-33 143.7 94 73.4
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 9.8e-33 143.3 94 73.4
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 9.8e-33 143.3 94 73.4
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 9.8e-33 143.3 90 74.4
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 9.8e-33 143.3 89 75.3
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.3e-32 142.9 94 71.3
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 1.7e-32 142.5 94 73.4
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 1.7e-32 142.5 94 73.4
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.2e-32 142.1 94 73.4
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.2e-32 142.1 94 73.4
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.9e-32 141.7 96 74.0
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.9e-32 141.7 88 75.0
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 3.7e-32 141.4 94 73.4
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 3.7e-32 141.4 94 73.4
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 3.7e-32 141.4 94 71.3
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 4.9e-32 141.0 84 78.6
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 6.4e-32 140.6 94 71.3
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 6.4e-32 140.6 94 71.3
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 8.3e-32 140.2 89 75.3
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 8.3e-32 140.2 96 69.8
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 8.3e-32 140.2 92 69.6
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.1e-31 139.8 94 68.1
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.1e-31 139.8 85 77.6
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.1e-31 139.8 85 77.6
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.4e-31 139.4 96 69.8
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.9e-31 139.0 94 70.2
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.9e-31 139.0 123 58.5
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 3.2e-31 138.3 90 70.0
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.4e-31 137.5 83 75.9
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 7.0e-31 137.1 104 68.3
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 7.0e-31 137.1 96 71.9
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 7.0e-31 137.1 96 71.9
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 9.2e-31 136.7 84 77.4
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.2e-30 136.3 96 65.6
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 2.7e-30 135.2 85 70.6
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 3.5e-30 134.8 85 75.3
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 4.6e-30 134.4 84 76.2
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 4.6e-30 134.4 84 76.2
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 4.6e-30 134.4 84 76.2
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 4.6e-30 134.4 85 72.9
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 1.7e-29 132.5 94 67.0
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 2.3e-29 132.1 84 73.8
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.0e-29 131.7 92 71.7
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 3.3e-28 128.3 85 68.2
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 4.7e-27 124.4 85 71.8
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.8e-26 122.5 81 66.7
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 7.5e-25 117.1 79 69.6
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 1.3e-24 116.3 64 79.7
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 3.7e-24 114.8 83 68.7
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.1e-22 109.0 100 59.0
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 3.5e-22 108.2 77 71.4
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 4.6e-22 107.8 74 71.6
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 1.0e-21 106.7 74 70.3
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.3e-21 105.5 94 60.6
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 3.9e-21 104.8 74 70.3
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 5.1e-21 104.4 71 64.8
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 6.6e-21 104.0 73 63.0
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 8.6e-21 103.6 73 63.0
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.9e-20 102.4 90 60.0
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.9e-20 102.4 90 60.0
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 2.5e-20 102.1 70 70.0
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 3.3e-20 101.7 74 67.6
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 4.3e-20 101.3 74 63.5
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.6e-19 99.4 74 64.9
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 3.6e-19 98.2 74 62.2
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.1e-18 96.7 83 51.8
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 2.3e-18 95.5 85 48.2
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 2.0e-17 92.4 65 67.7
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 2.6e-17 92.0 97 50.5
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 2.4e-15 85.5 46 80.4
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 5.1e-13 77.8 60 65.0
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 7.3e-12 73.9 85 42.4
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 6.8e-10 67.4 53 64.2
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 4.4e-09 64.7 76 51.3
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.7e-08 62.8 55 54.5
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 3.8e-08 61.6 43 62.8
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 6.0e-06 54.3 46 58.7


User provided reference genes

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