Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0023544 Sechium edule HOM05D006543 ORTHO05D008308 2.4e-273 944.9 466 100.0
MELO3C026233.2 Cucumis melo HOM05D006543 ORTHO05D008308 1.4e-228 796.2 479 83.7
CsaV3_1G000810 Cucumis sativus L. HOM05D006543 ORTHO05D008308 3.0e-228 795.0 479 83.9
ClCG06G017630 Citrullus lanatus HOM05D006543 ORTHO05D008308 6.7e-220 767.3 478 81.0
RcHm_v2.0_Chr7g0191211 Rosa chinensis HOM05D006543 ORTHO05D008308 2.7e-184 649.0 470 69.1
QL10p005246 Quercus lobata HOM05D006543 ORTHO05D008308 3.5e-184 648.7 477 68.6
Hma1.2p1_0046F.1_g027560 Hydrangea macrophylla HOM05D006543 ORTHO05D008308 6.0e-184 647.9 476 69.1
Lj5A100T59 Lonicera japonica HOM05D006543 ORTHO05D008308 1.1e-182 643.7 470 67.2
CiPaw.11G012100 Carya illinoinensis HOM05D006543 ORTHO05D008308 1.9e-182 642.9 475 69.3
Ciclev10020014m.g Citrus clementina HOM05D006543 ORTHO05D008308 5.6e-182 641.3 469 68.2
Prupe.5G157200 Prunus persica HOM05D006543 ORTHO05D008308 5.6e-182 641.3 477 68.8
Atru.chr9.1008 Acer truncatum HOM05D006543 ORTHO05D008308 2.8e-181 639.0 473 67.4
FvH4_5g07331 Fragaria vesca HOM05D006543 ORTHO05D008308 2.8e-181 639.0 473 67.7
MD14G1163800 Malus domestica HOM05D006543 ORTHO05D008308 8.0e-181 637.5 474 67.9
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 6.8e-180 634.4 471 68.2
CANSAT80G2173 Cannabis sativa HOM05D006543 ORTHO05D008308 9.8e-179 630.6 478 66.5
TWI14G0972 Tripterygium wilfordii HOM05D006543 ORTHO05D008308 1.4e-177 626.7 441 69.6
Actinidia37252 Actinidia chinensis HOM05D006543 ORTHO05D008308 1.9e-177 626.3 474 66.0
Duzib068G0092 Durio zibethinus HOM05D006543 ORTHO05D008308 3.2e-177 625.5 475 66.3
vmacro16708 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.2e-176 623.6 477 67.1
COL.COLO4_09265 Corchorus olitorius HOM05D006543 ORTHO05D008308 1.6e-176 623.2 477 65.8
Manes.06G115100 Manihot esculenta HOM05D006543 ORTHO05D008308 1.6e-176 623.2 480 65.8
TAR374G1424 Trochodendron aralioides HOM05D006543 ORTHO05D008308 2.7e-176 622.5 474 65.8
arahy.Tifrunner.gnm1.ann1.8LT8QW Arachis hypogaea HOM05D006543 ORTHO05D008308 3.5e-176 622.1 467 65.1
Lalb_Chr08g0236931 Lupinus albus HOM05D006543 ORTHO05D008308 3.5e-176 622.1 469 65.7
Thecc.03G122600 Theobroma cacao HOM05D006543 ORTHO05D008308 3.5e-176 622.1 479 66.0
Potri.012G092900 Populus trichocarpa HOM05D006543 ORTHO05D008308 1.0e-175 620.5 488 66.4
Sabra12G0067500 Salix brachista HOM05D006543 ORTHO05D008308 1.7e-175 619.8 481 66.1
arahy.Tifrunner.gnm1.ann1.YD5AXN Arachis hypogaea HOM05D006543 ORTHO05D008308 1.9e-174 616.3 467 64.5
Psat5g141840 Pisum sativum HOM05D006543 ORTHO05D008308 1.2e-173 613.6 469 63.5
CSS0036636 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 2.8e-173 612.5 477 64.8
Hund18538 Selenicereus undatus HOM05D006543 ORTHO05D008308 3.6e-173 612.1 472 64.8
Lsat_1_v5_gn_5_13221 Lactuca sativa HOM05D006543 ORTHO05D008308 8.1e-173 610.9 479 65.8
MSTRG.11294 Avicennia marina HOM05D006543 ORTHO05D008308 5.2e-172 608.2 475 64.0
AUR62025730 Chenopodium quinoa HOM05D006543 ORTHO05D008308 5.2e-172 608.2 473 63.6
THA.LOC104818195 Tarenaya hassleriana HOM05D006543 ORTHO05D008308 5.2e-172 608.2 485 62.5
Rhsim12G0172000 Rhododendron simsii HOM05D006543 ORTHO05D008308 6.8e-172 607.8 478 64.2
Gorai.006G270300 Gossypium raimondii HOM05D006543 ORTHO05D008308 8.9e-172 607.4 472 64.6
Sopen03g030490 Solanum pennellii HOM05D006543 ORTHO05D008308 8.9e-172 607.4 472 64.4
Glyma.04G192800 Glycine max HOM05D006543 ORTHO05D008308 1.2e-171 607.1 471 63.1
PGSC0003DMG400015239 Solanum tuberosum HOM05D006543 ORTHO05D008308 1.5e-171 606.7 472 64.4
Medtr3g075110 Medicago truncatula HOM05D006543 ORTHO05D008308 2.0e-171 606.3 469 63.8
Phvul.009G169000 Phaseolus vulgaris HOM05D006543 ORTHO05D008308 3.4e-171 605.5 471 64.3
ECA246G2708 Erigeron canadensis HOM05D006543 ORTHO05D008308 4.4e-171 605.1 445 68.1
Lj1g0002208 Lotus japonicus HOM05D006543 ORTHO05D008308 4.4e-171 605.1 472 64.2
Peaxi162Scf00089g00625 Petunia axillaris HOM05D006543 ORTHO05D008308 4.4e-171 605.1 468 65.0
Solyc03g111360.3 Solanum lycopersicum HOM05D006543 ORTHO05D008308 5.8e-171 604.7 472 63.8
HanXRQChr05g0154751 Helianthus annuus HOM05D006543 ORTHO05D008308 7.6e-171 604.4 484 64.9
Gohir.A09G244900 Gossypium hirsutum HOM05D006543 ORTHO05D008308 9.9e-171 604.0 474 64.3
GSVIVG01007545001 Vitis vinifera HOM05D006543 ORTHO05D008308 9.9e-171 604.0 470 65.5
Nitab4.5_0003282g0090 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.7e-170 603.2 469 64.6
Nitab4.5_0004750g0040 Nicotiana tabacum HOM05D006543 ORTHO05D008308 1.7e-170 603.2 471 64.1
BcaNung06574 Brassica carinata HOM05D006543 ORTHO05D008308 9.2e-169 597.4 483 61.5
Thhalv10004112m.g Eutrema salsugineum HOM05D006543 ORTHO05D008308 9.2e-169 597.4 480 61.7
TPR.G24245 Trifolium pratense HOM05D006543 ORTHO05D008308 9.2e-169 597.4 467 63.4
AL8G40370 Arabidopsis lyrata HOM05D006543 ORTHO05D008308 1.2e-168 597.0 485 61.2
Sp2g26410 Schrenkiella parvula HOM05D006543 ORTHO05D008308 4.6e-168 595.1 483 61.1
EL10Ac7g18072 Beta vulgaris HOM05D006543 ORTHO05D008308 6.0e-168 594.7 471 63.3
AUR62001276 Chenopodium quinoa HOM05D006543 ORTHO05D008308 6.0e-168 594.7 472 62.9
BolC9t53839H Brassica oleracea HOM05D006543 ORTHO05D008308 7.8e-168 594.3 483 61.3
AT5G63290 Arabidopsis thaliana HOM05D006543 ORTHO05D008308 1.0e-167 594.0 488 60.9
Aa31LG1G18710 Aethionema arabicum HOM05D006543 ORTHO05D008308 2.3e-167 592.8 483 60.9
Cc04_g10340 Coffea canephora HOM05D006543 ORTHO05D008308 5.1e-167 591.7 471 63.1
Carub.0008s2404 Capsella rubella HOM05D006543 ORTHO05D008308 1.1e-166 590.5 485 61.2
CAN.G352.10 Capsicum annuum HOM05D006543 ORTHO05D008308 1.9e-166 589.7 447 65.8
C09p09260 Brassica napus HOM05D006543 ORTHO05D008308 2.5e-166 589.3 483 60.9
BraA09t36471Z Brassica rapa HOM05D006543 ORTHO05D008308 4.3e-166 588.6 485 60.8
PGR044G1877 Punica granatum HOM05D006543 ORTHO05D008308 4.3e-166 588.6 481 62.6
A09p08200 Brassica napus HOM05D006543 ORTHO05D008308 9.6e-166 587.4 485 60.6
Aqoxy5G03584 Aquilegia oxysepala HOM05D006543 ORTHO05D008308 1.2e-165 587.0 483 61.3
Oeu045480.1 Olea europaea HOM05D006543 ORTHO05D008308 6.2e-165 584.7 492 61.4
MBI06_g38704_MAGBIO Magnolia biondii HOM05D006543 ORTHO05D008308 1.4e-161 573.5 483 61.7
Sc04g0000970 Simmondsia chinensis HOM05D006543 ORTHO05D008308 6.0e-160 568.2 466 61.4
Migut.I00467 Erythranthe guttata HOM05D006543 ORTHO05D008308 3.9e-159 565.5 497 59.8
Zm00001eb001600 Zea mays HOM05D006543 ORTHO05D008308 6.2e-157 558.1 425 64.2
SGA_v2.0_scaffold338G49246 Striga asiatica HOM05D006543 ORTHO05D008308 8.4e-154 547.7 464 61.0
Os12g0270100 Oryza sativa ssp. japonica HOM05D006543 ORTHO05D008308 1.4e-153 547.0 425 63.3
PSO729G0022 Papaver somniferum HOM05D006543 ORTHO05D008308 8.7e-151 537.7 474 60.5
Ah.15g095320 Amaranthus hybridus HOM05D006543 ORTHO05D008308 4.3e-150 535.4 472 57.6
Lsat_1_v5_gn_4_53181 Lactuca sativa HOM05D006543 ORTHO05D008308 1.6e-149 533.5 493 59.2
CDE04G0939 Ceratophyllum demersum HOM05D006543 ORTHO05D008308 6.9e-148 528.1 477 57.2
Gohir.D09G245800 Gossypium hirsutum HOM05D006543 ORTHO05D008308 3.9e-143 512.3 373 67.6
unitig_22.g5878 Utricularia gibba HOM05D006543 ORTHO05D008308 3.2e-137 492.7 385 62.9
SEGI_06622 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 3.5e-136 489.2 461 52.9
FvH4_5g07462 Fragaria vesca HOM05D006543 ORTHO05D008308 9.6e-134 481.1 380 65.0
Dinv11106 Davidia involucrata HOM05D006543 ORTHO05D008308 1.1e-129 467.6 319 72.7
Ca_16091_v3 Cicer arietinum L. HOM05D006543 ORTHO05D008308 1.2e-128 464.2 338 66.6
Pp3c13_23570 Physcomitrium patens HOM05D006543 ORTHO05D008308 5.9e-123 445.3 423 51.3
VMungo1309G1872 Vigna mungo HOM05D006543 ORTHO05D008308 1.6e-120 437.2 316 66.1
Mapoly0005s0190 Marchantia polymorpha HOM05D006543 ORTHO05D008308 3.0e-111 406.4 467 45.0
SMO364G0036 Selaginella moellendorffii HOM05D006543 ORTHO05D008308 5.3e-108 395.6 421 48.5
vmacro23154 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 2.1e-96 357.1 255 69.8
CBR_g58805 Chara braunii HOM05D006543 ORTHO05D008308 2.7e-96 356.7 392 47.2
PRCOL_00001606 Prasinoderma coloniale HOM05D006543 ORTHO05D008308 8.8e-95 351.7 432 43.8
ATR0733G153 Amborella trichopoda HOM05D006543 ORTHO05D008308 5.7e-94 349.0 360 50.6
Cre03.g171461 Chlamydomonas reinhardtii HOM05D006543 ORTHO05D008308 2.4e-92 343.6 388 45.9
BcaB04g19911 Brassica carinata HOM05D006543 ORTHO05D008308 7.7e-91 338.6 267 64.0
AagrBONN_evm.TU.Sc2ySwM_344.2040 Anthoceros agrestis HOM05D006543 ORTHO05D008308 6.5e-90 335.5 396 44.7
CARHR277150 Cardamine hirsuta HOM05D006543 ORTHO05D008308 3.6e-88 329.7 274 61.7
Nn3g16581 Nelumbo nucifera HOM05D006543 ORTHO05D008308 1.5e-86 324.3 258 64.0
vmacro16659 Vaccinium macrocarpon HOM05D006543 ORTHO05D008308 1.2e-83 314.7 312 55.4
Glyma.06G173133 Glycine max HOM05D006543 ORTHO05D008308 1.3e-82 311.2 238 63.0
CSS0033277 Camellia sinensis var. sinensis HOM05D006543 ORTHO05D008308 3.3e-81 306.6 299 53.5
MCO01G029 Micromonas commoda HOM05D006543 ORTHO05D008308 6.8e-79 298.9 450 38.7
Actinidia36787 Actinidia chinensis HOM05D006543 ORTHO05D008308 5.6e-73 279.3 243 60.1
CARHR277160 Cardamine hirsuta HOM05D006543 ORTHO05D008308 1.3e-69 268.1 210 59.5
MD06G1157200 Malus domestica HOM05D006543 ORTHO05D008308 5.2e-63 246.1 202 64.4
BcaB01g05367 Brassica carinata HOM05D006543 ORTHO05D008308 3.5e-59 233.4 230 54.8
SEGI_28812 Sequoiadendron giganteum HOM05D006543 ORTHO05D008308 6.2e-56 222.6 176 60.2
Glyma.06G173067 Glycine max HOM05D006543 ORTHO05D008308 2.6e-54 217.2 184 60.3
Oeu045471.1 Olea europaea HOM05D006543 ORTHO05D008308 3.8e-45 186.8 117 73.5
Oeu037566.1 Olea europaea HOM05D006543 ORTHO05D008308 6.0e-43 179.5 117 70.1
CAN.G352.9 Capsicum annuum HOM05D006543 ORTHO05D003127 1.6e-35 154.8 116 66.4
FvH4_5g07400 Fragaria vesca HOM05D006543 ORTHO05D008308 1.0e-26 125.6 108 62.0
MD06G1156000 Malus domestica HOM05D006543 ORTHO05D008308 3.3e-25 120.6 115 53.0
CAN.G352.8 Capsicum annuum HOM05D006543 ORTHO05D008308 5.3e-23 113.2 99 58.6
Actinidia26749 Actinidia chinensis HOM05D006543 ORTHO05D008308 2.4e-07 61.2 46 67.4
MD06G1152300 Malus domestica HOM05D006543 ORTHO05D008308 6.9e-07 59.7 66 47.0
Cfa009975 Carpinus fangiana HOM05D006543 ORTHO05D008308 1.5e-06 58.5 44 61.4
BcaNung00695 Brassica carinata HOM05D000342 ORTHO05D000217 4.5e-06 57.0 31 77.4


User provided reference genes

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