Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.4e-155 553.1 332 100.0
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 3.3e-136 488.8 342 89.2
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 9.0e-134 480.7 351 86.6
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 3.3e-128 462.2 362 83.1
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 5.6e-128 461.5 335 79.7
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 2.8e-127 459.1 335 82.7
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.8e-126 456.4 335 80.6
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.2e-125 453.8 336 81.0
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.5e-125 453.4 335 80.3
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 5.8e-125 451.4 235 95.3
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 5.8e-125 451.4 235 95.3
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 2.9e-124 449.1 316 84.2
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 6.4e-124 448.0 333 81.4
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 6.4e-124 448.0 235 94.5
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 6.4e-124 448.0 235 94.5
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 1.1e-123 447.2 235 93.6
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 1.1e-123 447.2 235 93.6
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 2.4e-123 446.0 235 93.2
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 2.4e-123 446.0 235 93.6
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 4.2e-123 445.3 307 87.0
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.2e-123 445.3 359 76.3
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 5.5e-123 444.9 235 93.2
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 5.5e-123 444.9 330 81.8
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.2e-122 443.7 359 75.8
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 2.1e-122 443.0 235 94.0
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 3.5e-122 442.2 330 76.7
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 1.8e-121 439.9 318 83.3
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.8e-121 439.9 347 79.0
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 1.8e-121 439.9 330 78.2
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 6.7e-121 438.0 235 91.5
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 6.7e-121 438.0 233 92.3
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 8.7e-121 437.6 235 91.9
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 8.7e-121 437.6 318 83.6
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 1.1e-120 437.2 345 72.2
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.9e-120 436.4 316 82.6
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.9e-120 436.4 316 82.6
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 2.5e-120 436.0 323 82.0
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 4.3e-120 435.3 335 78.8
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 7.4e-120 434.5 345 78.8
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 7.4e-120 434.5 234 91.9
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 9.6e-120 434.1 333 83.5
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 1.6e-119 433.3 328 80.2
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 2.1e-119 433.0 235 90.6
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 2.8e-119 432.6 237 90.7
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 2.8e-119 432.6 236 90.3
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 3.7e-119 432.2 221 95.9
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 3.7e-119 432.2 234 91.5
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 3.7e-119 432.2 234 91.5
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 3.7e-119 432.2 336 82.1
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 3.7e-119 432.2 323 77.1
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 4.8e-119 431.8 235 90.2
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 4.8e-119 431.8 330 80.3
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 4.8e-119 431.8 234 89.7
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 4.8e-119 431.8 327 80.7
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 6.2e-119 431.4 235 90.2
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 6.2e-119 431.4 318 79.9
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 6.2e-119 431.4 234 89.7
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 1.4e-118 430.3 237 90.7
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 2.4e-118 429.5 235 90.6
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 3.1e-118 429.1 234 91.0
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 4.0e-118 428.7 236 91.1
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 1.2e-117 427.2 235 90.6
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 2.0e-117 426.4 326 80.7
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 4.5e-117 425.2 221 94.6
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 3.8e-116 422.2 237 89.0
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 4.9e-116 421.8 220 94.1
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 4.9e-116 421.8 235 89.4
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 4.9e-116 421.8 328 77.7
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 6.5e-116 421.4 331 73.4
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 8.4e-116 421.0 220 94.1
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 8.4e-116 421.0 236 89.8
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 1.1e-115 420.6 323 78.0
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.4e-115 420.2 238 89.5
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 1.4e-115 420.2 238 89.5
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 1.4e-115 420.2 228 90.4
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 2.5e-115 419.5 228 89.9
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 4.2e-115 418.7 236 89.8
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.2e-115 418.7 331 79.8
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 2.1e-114 416.4 228 90.8
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 1.8e-113 413.3 231 88.3
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 1.8e-113 413.3 328 80.2
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 6.7e-113 411.4 228 88.6
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 1.9e-112 409.8 395 67.8
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 3.3e-112 409.1 228 88.2
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 4.3e-112 408.7 220 90.9
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 1.3e-111 407.1 233 87.1
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 4.8e-111 405.2 231 85.7
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 4.8e-111 405.2 231 85.7
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 6.3e-111 404.8 231 85.7
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 6.3e-111 404.8 231 85.7
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 1.8e-110 403.3 236 86.9
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 4.1e-110 402.1 397 64.7
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 9.0e-110 401.0 231 85.7
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 3.4e-109 399.1 318 74.5
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 4.5e-109 398.7 230 86.5
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 5.0e-108 395.2 238 82.8
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 9.3e-107 391.0 235 85.1
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 2.7e-106 389.4 232 84.5
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 8.7e-105 384.4 231 83.5
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 3.3e-104 382.5 234 80.3
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 4.3e-104 382.1 238 81.9
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 2.2e-103 379.8 208 92.3
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 1.1e-102 377.5 238 79.8
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 7.7e-101 371.3 236 78.8
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 4.8e-95 352.1 234 77.4
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 7.7e-93 344.7 285 78.9
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 6.1e-90 335.1 181 92.3
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 5.2e-89 332.0 333 56.5
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 2.4e-86 323.2 232 71.1
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 2.4e-86 323.2 236 70.3
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 2.6e-85 319.7 228 74.1
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 3.2e-83 312.8 171 90.1
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 1.1e-78 297.7 564 37.6
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 2.7e-77 293.1 235 66.0
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 5.0e-76 288.9 173 86.1
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 6.5e-76 288.5 224 65.6
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 1.5e-75 287.3 247 66.0
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 6.1e-74 282.0 207 72.5
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 6.3e-71 271.9 189 72.0
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 1.7e-68 263.8 148 87.8
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 5.7e-64 248.8 132 93.2
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 2.3e-60 236.9 217 74.2
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.3e-59 232.6 225 57.3
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 2.0e-56 223.8 198 63.1
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 1.2e-53 214.5 229 67.2
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.0e-52 211.5 107 96.3
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.0e-52 209.9 108 95.4
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 3.9e-52 209.5 107 96.3
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 4.7e-50 202.6 108 89.8
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 8.0e-50 201.8 131 78.6
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 2.6e-48 196.8 201 70.1
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.6e-48 196.8 107 89.7
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 4.9e-47 192.6 102 91.2
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.4e-47 192.2 106 89.6
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 8.6e-44 181.8 92 94.6
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 1.2e-42 177.9 104 83.7
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 2.8e-42 176.8 95 92.6
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 2.3e-41 173.7 95 91.6
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 5.8e-40 169.1 124 71.8
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 3.7e-39 166.4 91 87.9
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 2.5e-35 153.7 167 62.3
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 8.1e-34 148.7 74 94.6
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 6.4e-31 139.0 71 91.5
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 6.4e-31 139.0 71 91.5
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 5.3e-25 119.4 86 70.9
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 6.4e-23 112.5 58 91.4
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.1e-18 97.4 132 52.3
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 1.8e-17 94.4 154 62.3
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 4.8e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.1e-10 68.9 38 86.8
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 1.8e-09 67.8 103 45.6
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 4.9e-07 59.7 45 64.4
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 8.4e-07 58.9 71 47.9
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 7.1e-06 55.8 128 53.9


User provided reference genes

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