Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 0.0e+00 1474.5 741 100.0
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 0.0e+00 1229.5 738 84.3
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 0.0e+00 1196.0 740 81.6
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 0.0e+00 1190.3 740 81.5
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 5.4e-280 967.6 752 66.5
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 1.3e-278 963.0 755 65.2
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 2.2e-273 945.7 755 63.8
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 6.4e-273 944.1 753 64.8
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 3.5e-271 938.3 753 64.9
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 1.0e-270 936.8 753 63.7
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 2.8e-268 928.7 757 62.9
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 1.1e-267 926.8 758 63.6
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.4e-267 926.4 756 64.2
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 5.2e-267 924.5 756 63.5
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 1.2e-266 923.3 753 64.4
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 5.8e-266 921.0 757 63.3
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 2.9e-265 918.7 757 63.7
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 3.8e-265 918.3 757 63.0
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 4.9e-265 917.9 759 62.6
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 9.3e-264 913.7 759 62.3
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.7e-262 909.4 763 62.6
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.9e-261 906.0 756 61.2
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.3e-261 905.2 763 62.8
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.3e-261 905.2 763 63.0
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 1.6e-260 902.9 755 62.4
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 1.4e-259 899.8 740 63.6
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 1.8e-259 899.4 755 61.7
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 2.4e-259 899.0 761 61.8
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 9.0e-259 897.1 754 62.1
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 9.0e-259 897.1 733 62.8
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 5.8e-258 894.4 761 61.9
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 9.9e-258 893.6 753 61.2
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 2.9e-257 892.1 749 61.3
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.1e-256 890.2 759 61.1
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.1e-256 890.2 759 61.1
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.4e-256 889.0 718 63.4
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.2e-255 886.7 738 62.9
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 4.6e-255 884.8 737 63.0
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 1.0e-254 883.6 747 61.2
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 2.3e-254 882.5 738 62.2
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 4.8e-252 874.8 724 62.8
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 4.8e-252 874.8 738 62.5
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.1e-251 873.6 747 61.2
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.8e-251 872.8 738 61.0
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 9.0e-251 870.5 752 60.6
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 9.0e-251 870.5 738 62.1
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 1.2e-250 870.2 739 62.1
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 2.6e-250 869.0 776 57.7
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 5.8e-250 867.8 720 63.2
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 2.2e-249 865.9 776 58.8
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 2.9e-249 865.5 745 60.7
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 2.9e-249 865.5 721 61.0
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 1.9e-248 862.8 739 60.8
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.2e-247 860.1 746 59.5
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 2.1e-247 859.4 740 60.5
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 2.1e-247 859.4 735 59.3
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 2.7e-247 859.0 723 61.3
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 6.7e-246 854.4 740 60.1
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 6.7e-246 854.4 739 60.4
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 8.7e-246 854.0 761 59.1
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 4.8e-244 848.2 740 59.9
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.3e-241 840.1 758 59.1
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 2.9e-241 839.0 770 57.8
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.2e-239 833.6 737 58.5
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 2.1e-239 832.8 746 57.6
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.0e-238 830.5 747 57.2
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 1.5e-237 826.6 731 58.7
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.9e-237 826.2 733 58.5
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 3.3e-237 825.5 711 60.3
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 9.6e-237 823.9 816 54.3
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.4e-235 819.3 727 58.7
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 3.1e-235 818.9 731 58.1
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 1.1e-232 810.4 735 57.7
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 1.4e-232 810.1 781 55.8
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 1.9e-229 799.7 743 57.2
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 4.3e-229 798.5 740 56.4
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 5.7e-229 798.1 727 58.2
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 7.4e-229 797.7 740 56.2
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 9.0e-227 790.8 739 57.2
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 1.0e-225 787.3 739 57.2
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 1.3e-225 786.9 1001 46.6
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 1.9e-224 783.1 740 56.4
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 4.8e-220 768.5 739 55.5
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 6.3e-220 768.1 739 55.3
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 6.9e-219 764.6 749 53.0
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 4.5e-218 761.9 654 61.6
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 2.9e-217 759.2 771 52.7
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.4e-216 756.9 863 48.4
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 2.0e-213 746.5 640 59.8
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.4e-211 740.3 955 46.2
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 2.4e-211 739.6 694 54.5
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 2.0e-210 736.5 732 53.7
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 1.0e-206 724.2 744 54.7
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 1.1e-200 704.1 601 59.9
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 1.2e-197 694.1 764 48.8
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.1e-179 634.4 606 58.6
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 1.8e-179 633.6 606 56.9
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 8.3e-172 608.2 488 64.1
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 1.6e-170 604.0 712 46.9
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 3.0e-169 599.7 559 57.8
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 1.1e-163 581.3 752 45.6
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 2.9e-156 556.6 751 42.2
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 5.1e-153 545.8 800 40.2
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 5.5e-131 472.6 381 61.9
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 2.2e-124 450.7 392 57.1
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.5e-112 411.4 477 44.9
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.9e-106 389.0 471 44.6
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.3e-103 379.4 495 42.4
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 6.5e-100 369.4 470 46.0
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 2.9e-92 344.0 718 34.4
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 3.1e-86 323.9 320 54.7
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.0e-84 318.9 331 56.2
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.4e-80 303.9 262 62.6
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 4.8e-79 300.1 1035 25.6
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.4e-78 296.6 298 57.7
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 2.7e-69 267.7 185 69.7
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 1.5e-59 235.3 291 48.5
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 1.2e-58 232.3 231 56.3
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 5.2e-57 226.9 160 66.9
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 7.5e-56 223.0 363 38.6
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.0e-54 216.5 299 38.5
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 9.2e-54 216.1 158 63.9
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 3.6e-50 204.1 716 26.5
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.3e-47 195.7 124 72.6
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 4.1e-46 190.7 174 54.0
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.1e-33 149.4 173 52.6
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 9.3e-30 136.3 167 48.5
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.6e-24 116.7 111 53.2
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 3.8e-23 114.4 288 34.4
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.0e-21 107.1 130 45.4
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 3.0e-20 104.8 119 52.1
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 5.6e-19 100.5 190 31.6
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 7.4e-19 100.1 73 68.5
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 5.1e-12 77.4 62 56.5
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.9e-11 75.5 90 48.9
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 2.1e-10 72.0 167 31.7
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 4.8e-10 70.9 159 28.9
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 4.8e-10 70.9 123 33.3
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 8.2e-10 70.1 54 61.1
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 2.9e-07 61.6 195 27.2
HanXRQChr17g0560751 Helianthus annuus HOM05D003873 ORTHO05D004127 2.5e-06 58.5 123 35.8
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 5.5e-06 57.4 43 55.8
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 5.5e-06 57.4 43 55.8
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 9.3e-06 56.6 38 65.8


User provided reference genes

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