Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 4.2e-179 631.3 341 100.0
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 2.0e-160 569.3 341 85.9
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 1.7e-159 566.2 339 85.0
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.0e-158 560.8 341 84.8
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 3.2e-126 455.7 309 72.8
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 5.4e-126 454.9 341 67.2
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 7.1e-126 454.5 328 69.2
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 3.0e-124 449.1 332 66.9
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.9e-123 446.4 348 65.8
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 1.9e-123 446.4 346 68.2
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 3.3e-123 445.7 314 70.1
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 5.6e-123 444.9 330 71.5
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 3.6e-122 442.2 329 66.3
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.6e-122 442.2 329 69.6
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 4.7e-122 441.8 341 66.9
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 4.7e-122 441.8 346 68.5
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 4.7e-122 441.8 277 76.2
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 2.4e-121 439.5 335 66.9
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 5.2e-121 438.3 277 76.2
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 1.5e-120 436.8 286 73.8
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 5.8e-120 434.9 277 75.5
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 5.8e-120 434.9 341 66.3
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 5.8e-120 434.9 286 73.4
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 7.6e-120 434.5 335 69.9
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 7.6e-120 434.5 335 69.9
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 7.6e-120 434.5 328 68.6
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 9.9e-120 434.1 318 71.1
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.3e-119 433.7 277 78.7
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.3e-119 433.7 277 78.7
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 1.3e-119 433.7 300 72.3
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.3e-119 433.7 341 68.6
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.3e-119 433.7 307 75.2
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.2e-119 433.0 341 67.7
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 6.4e-119 431.4 333 65.2
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 6.4e-119 431.4 309 69.3
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 8.4e-119 431.0 339 65.8
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 1.4e-118 430.3 287 74.9
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.9e-118 429.9 340 65.0
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 3.2e-118 429.1 344 65.1
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 4.2e-118 428.7 277 77.6
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 5.4e-118 428.3 350 64.3
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 7.1e-118 427.9 339 64.6
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.6e-117 426.8 341 67.2
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 2.1e-117 426.4 353 62.6
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.1e-117 426.4 332 69.3
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.1e-117 426.4 341 68.3
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 2.1e-117 426.4 308 70.8
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 6.0e-117 424.9 277 79.8
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 7.8e-117 424.5 331 70.1
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 7.8e-117 424.5 307 70.4
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 1.3e-116 423.7 335 72.8
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 3.0e-116 422.5 353 62.6
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 3.9e-116 422.2 315 70.2
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 6.6e-116 421.4 329 69.9
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 8.7e-116 421.0 328 65.9
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.5e-115 420.2 253 80.6
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 2.8e-114 416.0 285 80.4
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 4.8e-114 415.2 342 63.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 6.2e-114 414.8 317 69.1
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 8.1e-114 414.5 330 72.4
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.1e-113 414.1 253 79.4
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 5.3e-113 411.8 345 62.9
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 6.9e-113 411.4 317 65.0
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.0e-112 409.8 286 70.3
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 3.4e-112 409.1 333 71.5
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 3.4e-112 409.1 225 84.0
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 3.4e-112 409.1 334 67.1
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 9.9e-112 407.5 340 61.8
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 1.3e-111 407.1 222 86.5
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.7e-111 406.8 324 69.1
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 6.4e-111 404.8 352 62.2
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 6.4e-111 404.8 227 82.4
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.4e-110 403.7 223 84.3
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 2.4e-110 402.9 285 67.7
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 3.2e-110 402.5 250 76.8
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 4.2e-110 402.1 228 83.8
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.2e-109 400.6 348 65.5
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 6.6e-108 394.8 339 61.7
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 6.6e-108 394.8 253 72.3
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.9e-107 393.3 339 62.2
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 3.3e-107 392.5 273 70.3
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 9.0e-105 384.4 324 68.2
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 1.4e-102 377.1 327 61.5
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 1.3e-98 364.0 339 57.8
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 3.7e-98 362.5 206 82.5
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 7.6e-96 354.8 329 66.9
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 3.0e-92 342.8 233 67.8
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 3.9e-92 342.4 234 67.5
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 1.1e-91 340.9 307 62.9
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 5.7e-91 338.6 339 54.3
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 9.6e-91 337.8 304 60.2
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 3.8e-87 325.9 342 53.5
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 6.5e-87 325.1 261 66.7
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.1e-86 324.3 491 43.8
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.4e-86 323.9 348 53.4
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 3.6e-85 319.3 208 74.5
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.9e-83 313.5 276 62.7
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 5.5e-78 295.4 171 80.7
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.4e-76 290.8 220 60.9
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 5.7e-75 285.4 167 81.4
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 6.3e-74 282.0 224 65.2
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 1.4e-73 280.8 251 52.6
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.4e-68 264.2 210 65.2
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 1.3e-66 257.7 328 44.8
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.8e-66 255.8 203 67.0
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 1.3e-63 247.7 234 66.7
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 1.7e-63 247.3 144 81.2
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 1.5e-59 234.2 208 53.4
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 9.1e-57 224.9 119 87.4
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.9e-55 219.9 249 52.6
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 5.7e-51 205.7 197 55.8
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.2e-42 177.2 156 59.6
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 1.6e-40 171.0 96 84.4
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 3.0e-36 156.8 109 69.7
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.1e-33 146.4 155 54.2
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 1.2e-32 144.8 330 29.4
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 4.9e-26 122.9 62 87.1
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 9.5e-22 108.6 78 66.7
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.5e-19 101.3 105 53.3
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.8e-12 75.9 75 57.3
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.9e-10 70.5 58 63.8
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.9e-10 70.5 58 63.8
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.2e-08 65.1 65 53.8
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.9e-06 57.8 171 29.2


User provided reference genes

Program Settings