Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.0e-79 300.1 155 100.0
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 2.5e-54 215.7 159 74.2
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 2.7e-48 195.7 161 67.1
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.9e-46 189.5 176 61.9
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 4.3e-38 161.8 144 61.1
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.3e-37 160.2 151 57.6
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 2.1e-37 159.5 158 60.1
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 1.4e-36 156.8 150 58.0
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.4e-36 156.8 141 58.2
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 3.1e-36 155.6 143 62.2
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.1e-36 155.6 119 68.9
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 5.3e-36 154.8 142 57.0
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 6.9e-36 154.5 142 59.2
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 9.0e-36 154.1 121 62.8
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 9.0e-36 154.1 155 56.8
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.2e-35 153.7 157 59.2
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 2.6e-35 152.5 142 54.9
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 9.9e-35 150.6 122 62.3
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.3e-34 150.2 128 64.1
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.2e-34 149.4 156 55.1
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 2.2e-34 149.4 127 63.0
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.2e-34 149.4 160 51.9
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.9e-34 149.1 155 56.8
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 3.8e-34 148.7 148 54.7
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.8e-34 148.7 156 53.8
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 4.9e-34 148.3 155 56.1
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 4.9e-34 148.3 161 54.7
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 6.4e-34 147.9 149 53.7
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 8.4e-34 147.5 123 61.8
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 8.4e-34 147.5 159 54.1
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 8.4e-34 147.5 145 55.9
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.1e-33 147.1 157 52.9
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.1e-33 147.1 160 55.6
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 2.4e-33 146.0 128 61.7
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.4e-33 144.8 153 53.6
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 5.4e-33 144.8 142 54.9
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 5.4e-33 144.8 154 53.9
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 7.1e-33 144.4 131 56.5
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 7.1e-33 144.4 142 57.7
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 7.1e-33 144.4 155 53.5
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.6e-32 143.3 148 50.7
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 1.6e-32 143.3 161 52.8
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 2.1e-32 142.9 134 57.5
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.7e-32 142.5 153 54.2
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 4.6e-32 141.7 145 55.9
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 4.6e-32 141.7 165 49.1
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.3e-31 140.2 148 54.7
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 1.3e-31 140.2 138 55.8
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.3e-31 140.2 136 58.8
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 3.0e-31 139.0 160 50.6
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 3.9e-31 138.7 147 53.1
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 3.9e-31 138.7 128 57.0
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 5.1e-31 138.3 156 50.6
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 5.1e-31 138.3 150 52.7
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 5.1e-31 138.3 158 50.0
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 8.7e-31 137.5 135 53.3
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.5e-30 136.7 153 51.6
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.5e-30 136.7 155 52.9
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.9e-30 136.3 153 51.6
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.5e-30 136.0 149 50.3
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 4.3e-30 135.2 154 48.7
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 5.6e-30 134.8 148 51.4
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 7.4e-30 134.4 143 53.8
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 2.8e-29 132.5 150 48.0
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 4.8e-29 131.7 149 52.3
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 4.8e-29 131.7 126 53.2
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 8.1e-29 131.0 146 48.6
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 8.1e-29 131.0 127 54.3
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.1e-28 130.6 149 51.7
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.1e-28 130.6 118 55.1
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.4e-28 130.2 144 52.1
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.4e-28 130.2 145 53.1
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.8e-28 129.8 137 53.3
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.8e-28 129.8 150 52.0
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 3.1e-28 129.0 130 52.3
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 4.0e-28 128.6 146 52.7
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 4.0e-28 128.6 141 50.4
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 5.3e-28 128.3 142 52.1
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 1.5e-27 126.7 121 56.2
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.5e-27 126.7 141 50.4
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 2.0e-27 126.3 122 55.7
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 2.0e-27 126.3 146 52.7
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.0e-27 126.3 155 52.3
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 3.4e-27 125.6 146 52.1
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.4e-27 125.6 136 50.7
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 5.8e-27 124.8 145 52.4
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 5.8e-27 124.8 137 50.4
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 7.6e-27 124.4 145 49.0
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.3e-26 123.6 147 49.0
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.3e-26 123.6 143 51.7
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.3e-26 123.6 164 46.3
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-26 123.2 153 51.6
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.7e-26 123.2 153 51.6
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.7e-26 123.2 92 64.1
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.2e-26 122.9 146 52.1
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 2.9e-26 122.5 142 51.4
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 2.9e-26 122.5 142 51.4
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 2.9e-26 122.5 91 68.1
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 3.8e-26 122.1 143 49.7
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 6.5e-26 121.3 137 53.3
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 3.2e-25 119.0 105 55.2
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 7.1e-25 117.9 94 60.6
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 9.3e-25 117.5 141 51.1
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.2e-24 117.1 94 59.6
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 3.5e-24 115.5 149 47.7
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 4.6e-24 115.2 166 45.8
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 7.9e-24 114.4 138 47.8
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.8e-23 113.2 141 47.5
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.8e-23 113.2 164 45.7
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 3.0e-23 112.5 145 44.1
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.0e-23 112.5 145 44.1
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 3.0e-23 112.5 137 46.0
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 3.0e-23 112.5 137 46.0
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.9e-23 112.1 100 56.0
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 5.1e-23 111.7 139 44.6
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 5.1e-23 111.7 90 61.1
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 5.1e-23 111.7 88 62.5
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 8.7e-23 110.9 141 48.2
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 8.7e-23 110.9 141 48.2
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 8.7e-23 110.9 141 48.2
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-22 110.2 139 44.6
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.5e-22 110.2 139 44.6
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 1.9e-22 109.8 138 44.9
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 4.3e-22 108.6 143 44.8
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 9.6e-22 107.5 142 45.1
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 4.8e-21 105.1 145 40.0
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.4e-20 103.6 170 40.6
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.8e-20 103.2 121 43.8
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.2e-19 100.5 75 65.3
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 2.6e-19 99.4 132 43.2
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 7.6e-19 97.8 83 57.8
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.3e-18 97.1 153 41.8
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.9e-18 95.9 118 47.5
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.5e-18 94.7 137 43.1
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-17 94.0 135 43.7
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 7.1e-17 91.3 92 51.1
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 9.3e-17 90.9 141 40.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 9.3e-17 90.9 113 49.6
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 3.0e-15 85.9 111 46.8
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.9e-15 85.5 66 63.6
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.9e-14 83.2 151 35.8
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 4.3e-14 82.0 94 44.7
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 7.4e-14 81.3 147 39.5
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 1.3e-13 80.5 130 37.7
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 4.1e-12 75.5 152 36.8
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 6.9e-12 74.7 46 76.1
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 2.0e-11 73.2 99 44.4
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 1.1e-09 67.4 106 42.5
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.4e-09 67.0 90 42.2
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 5.5e-09 65.1 71 49.3
Sed0015447 Sechium edule HOM05D004569 ORTHO05D005333 2.1e-08 63.2 124 42.7
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.1e-08 63.2 52 57.7
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.6e-08 62.4 94 39.4
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 3.6e-08 62.4 141 33.3
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 4.6e-08 62.0 84 40.5
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 2.3e-07 59.7 43 62.8
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 9.7e-06 54.3 40 62.5


User provided reference genes

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