Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 1.4e-179 632.9 323 100.0
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 7.4e-117 424.5 347 71.5
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 1.1e-115 420.6 249 87.1
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 1.8e-115 419.9 360 69.4
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 5.3e-115 418.3 354 69.2
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 3.8e-113 412.1 250 83.6
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 1.1e-112 410.6 250 84.4
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 1.4e-112 410.2 250 83.2
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 1.4e-112 410.2 250 84.4
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 2.5e-112 409.5 250 83.6
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 2.5e-112 409.5 250 83.2
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 2.5e-112 409.5 250 83.2
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.2e-111 407.1 250 82.0
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.2e-111 407.1 250 82.0
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.6e-111 406.8 250 83.2
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 4.7e-111 405.2 317 71.3
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 4.7e-111 405.2 250 82.0
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 1.4e-110 403.7 250 82.4
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 1.8e-110 403.3 250 82.0
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 1.8e-110 403.3 317 71.0
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 1.8e-110 403.3 250 82.8
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.3e-110 402.9 249 83.9
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 3.0e-110 402.5 250 82.4
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 3.0e-110 402.5 250 83.6
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.0e-110 402.5 250 82.4
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 3.9e-110 402.1 250 82.4
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 5.2e-110 401.7 250 83.2
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 5.2e-110 401.7 250 83.6
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 5.2e-110 401.7 250 82.8
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 5.2e-110 401.7 250 81.6
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 6.7e-110 401.4 262 79.8
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 6.7e-110 401.4 250 82.0
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 8.8e-110 401.0 317 70.7
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 1.1e-109 400.6 250 82.4
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 1.5e-109 400.2 250 81.2
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 1.5e-109 400.2 250 81.6
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.5e-109 400.2 250 82.0
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 2.0e-109 399.8 250 82.4
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.0e-109 399.8 250 82.0
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 2.6e-109 399.4 250 81.2
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 3.3e-109 399.1 250 82.4
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 3.3e-109 399.1 250 81.6
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 7.4e-109 397.9 250 82.0
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 9.7e-109 397.5 250 81.2
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.7e-108 396.7 250 82.0
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 2.2e-108 396.4 290 74.1
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 2.8e-108 396.0 250 81.2
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 2.8e-108 396.0 250 80.8
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 3.7e-108 395.6 250 80.0
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 8.2e-108 394.4 250 80.0
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 8.2e-108 394.4 250 80.8
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 1.1e-107 394.0 250 80.4
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 1.4e-107 393.7 317 69.7
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.4e-107 393.7 250 80.8
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 1.4e-107 393.7 250 80.8
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 1.8e-107 393.3 250 79.6
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.8e-107 393.3 249 79.5
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 2.4e-107 392.9 250 80.4
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 2.4e-107 392.9 250 80.8
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 2.4e-107 392.9 250 80.8
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.4e-107 392.9 317 70.0
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 3.1e-107 392.5 250 80.4
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 3.1e-107 392.5 249 80.7
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 4.1e-107 392.1 248 80.2
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 5.3e-107 391.7 250 79.2
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 9.1e-107 391.0 250 79.6
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 1.2e-106 390.6 250 80.4
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 2.0e-106 389.8 249 80.3
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.0e-106 389.8 250 78.8
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 2.0e-106 389.8 250 78.8
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 2.6e-106 389.4 250 80.0
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 3.5e-106 389.0 250 80.0
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.5e-106 388.7 246 81.3
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 5.9e-106 388.3 336 66.7
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 5.9e-106 388.3 249 79.9
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 7.7e-106 387.9 250 80.0
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.7e-106 387.9 250 80.0
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.7e-106 387.9 250 80.0
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 7.7e-106 387.9 250 80.0
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 7.7e-106 387.9 250 79.2
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 1.0e-105 387.5 250 79.6
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 1.0e-105 387.5 250 79.6
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.3e-105 387.1 250 79.2
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 1.3e-105 387.1 250 78.8
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 1.7e-105 386.7 246 79.7
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.7e-105 386.7 250 79.6
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 1.7e-105 386.7 250 79.2
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.7e-105 386.7 249 79.9
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 2.2e-105 386.3 246 79.7
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 2.2e-105 386.3 250 79.2
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.2e-105 386.3 250 79.6
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 2.2e-105 386.3 250 81.6
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 2.2e-105 386.3 250 80.0
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 2.9e-105 386.0 246 79.7
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 2.9e-105 386.0 250 78.8
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 3.8e-105 385.6 246 80.1
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 5.0e-105 385.2 250 79.2
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 8.5e-105 384.4 250 79.6
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 1.1e-104 384.0 250 79.6
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 1.1e-104 384.0 250 79.6
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-104 383.6 250 78.8
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 1.5e-104 383.6 246 79.7
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 1.9e-104 383.3 250 78.8
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 1.9e-104 383.3 250 78.4
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 2.5e-104 382.9 250 79.2
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 2.5e-104 382.9 250 79.2
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 2.5e-104 382.9 287 72.1
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 2.5e-104 382.9 249 79.1
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 3.2e-104 382.5 250 78.4
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 3.2e-104 382.5 250 78.8
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 3.2e-104 382.5 250 78.4
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 3.2e-104 382.5 250 78.0
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 3.2e-104 382.5 250 78.4
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 9.4e-104 380.9 250 78.4
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 9.4e-104 380.9 317 67.5
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 3.6e-103 379.0 250 78.4
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 3.6e-103 379.0 250 77.6
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 4.7e-103 378.6 248 78.6
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.0e-102 377.5 250 77.6
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 3.0e-102 375.9 250 77.6
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 3.0e-102 375.9 237 81.4
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 3.0e-102 375.9 250 77.2
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 4.0e-102 375.6 250 76.8
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 6.7e-102 374.8 237 82.7
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 8.8e-102 374.4 250 77.6
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 1.2e-101 374.0 249 76.3
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 2.0e-101 373.2 248 77.0
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 2.6e-101 372.9 248 77.0
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 3.3e-101 372.5 250 77.6
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 5.7e-101 371.7 250 77.2
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 3.7e-100 369.0 250 76.0
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.1e-99 367.5 250 75.6
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.3e-99 365.2 250 76.0
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 5.3e-99 365.2 250 74.0
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.2e-98 364.0 250 73.6
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 6.5e-97 358.2 241 77.2
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 4.2e-96 355.5 342 59.4
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 2.1e-95 353.2 252 74.2
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 3.6e-95 352.4 246 74.0
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.4e-94 350.5 249 73.1
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 4.0e-94 349.0 250 72.8
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 1.2e-93 347.4 250 72.4
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.0e-93 346.7 248 74.2
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 2.6e-93 346.3 250 72.0
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 5.7e-93 345.1 248 73.8
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.2e-92 343.2 248 73.4
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 2.8e-92 342.8 246 71.5
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 2.4e-91 339.7 250 72.0
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 3.5e-90 335.9 243 72.0
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.3e-81 306.6 250 65.2
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 1.1e-80 304.3 194 81.4
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 2.5e-80 303.1 248 65.3
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 4.9e-76 288.9 191 78.5
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.6e-71 273.9 191 76.4
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 1.5e-53 214.2 123 87.0
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 4.4e-53 212.6 123 85.4
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 9.9e-53 211.5 150 74.0
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 3.2e-51 206.5 249 49.4
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 3.0e-41 173.3 107 81.3
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.4e-35 154.5 117 68.4
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 1.1e-30 138.3 74 85.1
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 1.6e-26 124.4 129 58.1
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 1.6e-26 124.4 129 58.1
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 1.6e-26 124.4 129 58.1
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 2.8e-23 113.6 266 30.5
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.6e-18 97.8 64 73.4
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 1.6e-18 97.8 64 73.4
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 2.7e-18 97.1 60 76.7
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 3.0e-17 93.6 67 74.6
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 3.9e-17 93.2 61 73.8
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 3.9e-17 93.2 61 73.8
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 3.9e-17 93.2 61 73.8
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 3.9e-17 93.2 61 73.8
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.5e-16 90.5 64 67.2
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 2.5e-16 90.5 64 67.2
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 7.4e-16 89.0 49 89.8
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 3.3e-08 63.5 59 61.0


User provided reference genes

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