Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 9.8e-248 859.8 458 100.0
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 8.3e-146 521.2 474 63.3
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 4.2e-142 508.8 458 63.5
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 4.1e-137 492.3 466 62.0
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 3.5e-35 153.7 582 30.2
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.2e-29 134.4 487 31.8
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 1.8e-28 131.3 479 29.4
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 4.1e-28 130.2 483 30.8
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 1.7e-26 124.8 484 30.0
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 2.3e-26 124.4 595 26.9
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 8.6e-26 122.5 470 30.6
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.5e-25 120.9 484 29.1
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 3.3e-25 120.6 598 27.1
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 4.2e-25 120.2 475 29.3
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 7.2e-25 119.4 476 29.2
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 2.1e-24 117.9 560 26.6
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 2.8e-24 117.5 486 29.8
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 4.7e-24 116.7 483 28.8
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 1.0e-23 115.5 379 30.9
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 4.0e-23 113.6 490 27.8
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 4.4e-22 110.2 496 26.6
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 5.7e-22 109.8 496 26.6
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 7.5e-22 109.4 466 27.0
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 1.4e-20 105.1 437 28.4
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 7.0e-20 102.8 468 26.3
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 1.2e-19 102.1 359 29.2
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 2.7e-19 100.9 500 26.0
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 3.5e-19 100.5 468 26.1
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 3.5e-19 100.5 514 26.5
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 7.8e-19 99.4 492 25.2
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 1.0e-18 99.0 485 26.4
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 2.3e-18 97.8 487 25.9
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 3.8e-18 97.1 464 26.9
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 6.6e-18 96.3 478 27.6
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 1.9e-17 94.7 499 26.7
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 1.9e-17 94.7 491 26.7
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 3.6e-16 90.5 484 24.0
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 1.4e-15 88.6 469 26.0
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 1.8e-15 88.2 537 25.0
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.3e-15 87.8 400 28.5
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 8.9e-15 85.9 481 24.3
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 1.2e-14 85.5 480 25.0
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.2e-14 85.5 544 25.0
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 1.5e-14 85.1 465 25.2
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 2.6e-14 84.3 467 25.9
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 3.4e-14 84.0 471 27.0
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 3.4e-14 84.0 481 26.4
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 3.4e-14 84.0 551 26.7
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 7.5e-14 82.8 529 25.9
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 1.3e-13 82.0 489 26.8
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 2.2e-13 81.3 501 26.3
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 4.9e-13 80.1 477 26.4
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 6.4e-13 79.7 487 23.6
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 1.4e-12 78.6 215 32.6
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.4e-12 78.6 202 29.7
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 5.4e-12 76.6 547 23.6
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 7.0e-12 76.3 497 25.4
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 4.6e-11 73.6 574 23.7
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 7.8e-11 72.8 588 23.6
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.7e-10 71.6 243 30.5
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 2.3e-10 71.2 472 26.3
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 5.0e-10 70.1 159 35.2
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 1.1e-09 68.9 161 34.2
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 4.3e-09 67.0 466 25.5
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 5.6e-09 66.6 532 23.3
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 7.3e-09 66.2 483 24.0
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 7.3e-09 66.2 530 23.4
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 1.6e-08 65.1 461 23.4
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 2.8e-08 64.3 503 23.5
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 4.7e-08 63.5 574 23.7
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 4.7e-08 63.5 512 22.9
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 6.2e-08 63.2 510 26.1
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 8.0e-08 62.8 488 26.2
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.8e-07 61.6 483 23.6
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 3.1e-07 60.8 529 23.1
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 4.0e-07 60.5 256 27.7
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 5.2e-07 60.1 214 26.6
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 5.2e-07 60.1 214 26.6
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 8.9e-07 59.3 597 23.3
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 1.2e-06 58.9 503 23.9
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 1.5e-06 58.5 528 22.5
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 5.8e-06 56.6 415 26.0


User provided reference genes

Program Settings