Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 0.0e+00 1092.4 563 100.0
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 7.7e-295 1016.5 563 92.2
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 1.2e-292 1009.2 563 92.0
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 1.1e-277 959.5 667 77.7
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 5.2e-251 870.9 567 79.0
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 3.4e-250 868.2 567 78.7
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 1.3e-249 866.3 566 78.3
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 2.9e-249 865.1 570 78.8
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 3.7e-249 864.8 567 78.1
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 8.3e-249 863.6 570 78.1
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 1.1e-248 863.2 573 78.0
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 1.4e-248 862.8 573 79.4
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 2.4e-248 862.1 569 80.3
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 4.6e-247 857.8 566 77.9
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.3e-246 856.3 549 80.1
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 3.0e-246 855.1 568 76.9
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 1.1e-245 853.2 582 77.3
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 1.5e-245 852.8 567 77.8
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 1.9e-245 852.4 566 77.2
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 2.5e-245 852.0 582 77.1
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 4.3e-245 851.3 568 76.6
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 7.3e-245 850.5 568 77.8
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 2.1e-244 849.0 568 76.9
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.8e-244 848.6 575 77.2
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 6.2e-244 847.4 570 77.4
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 1.8e-243 845.9 568 76.8
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 1.8e-243 845.9 571 77.6
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 4.0e-243 844.7 569 77.5
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 5.2e-243 844.3 570 76.5
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 2.0e-242 842.4 574 77.5
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 7.6e-242 840.5 567 77.6
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 9.9e-242 840.1 568 77.6
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.3e-241 839.7 572 78.0
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 2.9e-241 838.6 571 76.7
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 8.4e-241 837.0 566 77.9
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 3.2e-240 835.1 567 77.2
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 5.4e-240 834.3 587 75.1
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 1.2e-239 833.2 566 75.8
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 1.0e-238 830.1 573 76.8
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 2.3e-238 828.9 571 75.7
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 3.9e-238 828.2 569 76.8
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 6.6e-238 827.4 571 76.7
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 1.9e-237 825.9 577 75.9
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 3.6e-236 821.6 589 75.0
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 2.4e-235 818.9 568 74.3
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 9.0e-235 817.0 572 76.7
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 1.2e-234 816.6 574 75.8
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 1.5e-234 816.2 573 74.3
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 2.4e-232 808.9 569 75.7
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 2.7e-231 805.4 566 73.0
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 2.3e-230 802.4 567 74.8
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 1.5e-229 799.7 567 74.8
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 5.6e-229 797.7 574 73.5
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 9.6e-229 797.0 579 72.9
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.1e-228 795.8 528 78.0
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 2.1e-228 795.8 568 75.2
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 8.1e-228 793.9 576 73.4
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 4.0e-227 791.6 576 72.9
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.0e-227 790.4 576 73.1
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 1.2e-226 790.0 567 74.4
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 9.9e-226 786.9 576 72.6
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 2.2e-225 785.8 567 74.3
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 3.8e-225 785.0 568 73.9
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.9e-225 784.6 572 72.2
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 4.9e-225 784.6 568 73.8
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 6.4e-225 784.3 582 73.7
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 2.4e-224 782.3 569 72.1
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 7.9e-223 777.3 574 73.2
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.3e-222 775.8 603 69.8
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 3.0e-222 775.4 565 72.4
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 3.9e-222 775.0 573 73.1
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 8.7e-222 773.9 565 72.6
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 6.9e-219 764.2 561 72.2
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 9.9e-218 760.4 551 74.2
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.3e-217 760.0 557 73.2
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 1.7e-217 759.6 587 71.0
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 2.2e-217 759.2 631 65.3
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 8.4e-217 757.3 569 70.1
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.2e-215 753.4 516 76.9
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 2.7e-215 752.3 554 72.7
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 2.7e-215 752.3 554 72.7
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 2.7e-215 752.3 554 72.7
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 6.0e-215 751.1 580 68.4
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 6.0e-215 751.1 567 70.0
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 6.0e-215 751.1 562 71.0
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 6.0e-215 751.1 567 70.5
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 1.9e-213 746.1 564 70.7
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 1.6e-212 743.0 551 71.7
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 2.1e-212 742.7 554 71.8
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 2.8e-212 742.3 554 71.8
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 1.1e-211 740.3 553 71.1
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 1.4e-211 740.0 589 68.9
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 1.0e-209 733.8 580 68.6
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.2e-208 728.8 570 69.5
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 4.2e-208 728.4 561 69.7
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 4.6e-207 724.9 568 69.9
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 3.0e-206 722.2 499 74.7
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 6.7e-206 721.1 734 56.4
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 5.7e-205 718.0 566 68.2
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 4.8e-204 714.9 556 68.7
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 2.2e-201 706.1 506 72.9
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 3.8e-201 705.3 537 70.6
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 3.8e-201 705.3 569 70.1
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.5e-189 666.8 571 66.0
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.1e-187 660.6 565 65.0
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 4.5e-186 655.2 571 65.3
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 2.1e-183 646.4 416 79.1
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 2.1e-175 619.8 488 68.4
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 1.9e-168 596.7 590 58.8
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 8.3e-148 528.1 383 73.9
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 9.8e-141 504.6 495 58.8
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 9.8e-141 504.6 495 58.8
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 9.8e-141 504.6 495 58.8
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 8.6e-137 491.5 626 49.2
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 7.3e-136 488.4 577 53.2
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 2.1e-122 443.7 490 54.3
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 6.6e-121 438.7 347 68.3
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 8.1e-119 431.8 263 82.1
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 8.7e-89 332.0 261 70.5
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 7.4e-80 302.4 195 80.5
unitig_699.g19261 Utricularia gibba HOM05D004857 ORTHO05D005663 8.2e-79 298.9 332 54.8
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 1.2e-77 295.0 239 66.5
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 2.6e-77 293.9 549 42.1
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 1.7e-76 291.2 161 88.8
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 4.2e-75 286.6 344 50.9
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 4.8e-71 273.1 162 84.6
BcaB08g35313 Brassica carinata HOM05D004857 ORTHO05D005663 3.1e-70 270.4 271 57.6
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 4.5e-69 266.5 163 82.8
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 2.6e-64 250.8 194 69.6
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 2.4e-62 244.2 413 40.0
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 5.4e-54 216.5 166 71.1
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 1.3e-52 211.8 134 76.1
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 4.7e-50 203.4 134 74.6
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 2.0e-48 198.0 412 37.1
Lsat_1_v5_gn_5_77280 Lactuca sativa HOM05D004857 ORTHO05D005663 2.7e-45 187.6 181 60.2
CAN.G457.3 Capsicum annuum HOM05D004857 ORTHO05D005663 1.6e-42 178.3 117 82.9
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 1.6e-42 178.3 579 30.2
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 8.9e-41 172.6 114 78.9
Lsat_1_v5_gn_7_48580 Lactuca sativa HOM05D004857 ORTHO05D005663 7.0e-38 162.9 149 61.7
Lsat_1_v5_gn_3_37601 Lactuca sativa HOM05D004857 ORTHO05D005663 4.6e-37 160.2 158 60.1
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 1.6e-26 125.2 156 49.4
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 2.1e-26 124.8 68 88.2
TPR.G21223 Trifolium pratense HOM05D004857 ORTHO05D005663 3.7e-23 114.0 58 96.6
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 8.3e-23 112.8 78 71.8
Lsat_1_v5_gn_7_64781 Lactuca sativa HOM05D004857 ORTHO05D005663 6.6e-20 103.2 61 75.4
MCO14G054 Micromonas commoda HOM05D004857 ORTHO05D005663 1.9e-19 101.7 184 35.9
CAN.G1728.2 Capsicum annuum HOM05D004857 ORTHO05D005663 3.6e-18 97.4 69 75.4
Rhsim09G0048200 Rhododendron simsii HOM05D004857 ORTHO05D005663 1.1e-17 95.9 64 71.9
Actinidia02202 Actinidia chinensis HOM05D004857 ORTHO05D005663 3.1e-17 94.4 66 77.3
TAR626G1095 Trochodendron aralioides HOM05D004857 ORTHO05D005663 5.2e-17 93.6 68 75.0
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 2.9e-15 87.8 114 45.6
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 1.0e-12 79.3 86 46.5
Actinidia27556 Actinidia chinensis HOM05D004857 ORTHO05D005663 2.5e-11 74.7 56 75.0
vmacro05712 Vaccinium macrocarpon HOM05D006033 ORTHO05D005663 1.6e-10 72.0 49 79.6
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 2.1e-10 71.6 83 43.4
vmacro12720 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 5.8e-08 63.5 63 61.9
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 3.8e-07 60.8 35 85.7


User provided reference genes

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