Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 3652.4 1951 100.0
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 3011.1 1978 83.5
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2994.5 2078 80.7
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2956.4 2011 81.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2939.4 1915 84.8
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2402.1 1971 69.7
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2394.8 1944 68.7
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2391.7 1941 69.4
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2382.1 1922 69.9
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2365.9 1930 69.6
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2362.4 2007 67.9
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2350.1 1951 68.7
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2330.8 1854 69.6
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2313.1 1933 67.5
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2308.9 1939 68.2
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2303.1 1982 66.7
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2296.9 1796 69.0
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2288.8 1932 67.2
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2288.1 1933 66.7
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2283.8 1976 66.6
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2275.7 1934 67.9
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2271.5 1933 67.3
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2266.9 1932 67.0
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2266.5 1942 66.5
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2266.1 1943 66.4
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2263.4 1933 67.1
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2257.3 1931 67.9
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2255.7 1940 67.3
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2249.6 1912 67.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2249.2 1951 67.1
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2246.9 1980 66.1
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2234.9 1975 65.2
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2231.4 1969 65.9
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2230.7 1835 66.6
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2214.9 1952 64.5
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2213.7 1943 66.0
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2207.6 1888 67.5
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2206.0 1945 65.4
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2205.3 1930 65.2
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2192.5 1824 66.4
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2188.3 1783 67.2
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2173.7 1978 64.8
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2172.1 1918 65.4
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2157.5 1930 65.0
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2142.1 1945 62.5
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2135.9 1818 66.0
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2134.8 1933 64.6
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2130.1 1947 64.5
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2125.5 1946 63.1
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2125.5 1829 64.7
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2118.6 1928 63.7
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2117.0 1951 63.2
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2110.9 1906 64.7
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2110.5 1954 63.2
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2110.5 1924 64.0
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2108.6 1824 64.6
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2106.6 1916 63.6
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2098.2 1933 63.4
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2095.1 1930 63.4
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2089.3 1935 63.8
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2080.8 1947 62.4
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2080.4 1936 62.5
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2070.4 1934 62.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2063.5 1904 63.8
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2054.3 1924 62.3
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2050.4 1810 63.3
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2048.1 1952 60.9
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2044.6 1949 62.4
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2028.8 1819 63.4
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2024.6 1976 60.9
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1991.5 1930 61.3
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1990.7 1795 61.9
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1989.5 1835 61.5
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1982.6 1965 60.7
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1973.7 1979 60.0
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1942.9 1876 59.0
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1942.2 1963 59.4
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1939.1 1923 60.6
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1928.3 1828 60.2
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1927.1 1932 60.1
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1922.5 1943 58.2
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1910.2 1990 57.8
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1884.4 1679 62.7
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1877.8 1966 58.2
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1826.6 1958 56.4
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1817.4 1895 55.4
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1812.0 1849 56.4
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1803.5 1913 54.7
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1798.5 1905 54.8
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1795.8 1885 55.3
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1789.6 1880 55.0
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1786.2 1959 54.6
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1783.8 1983 55.3
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1777.7 1985 55.5
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1776.9 1886 54.5
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1776.5 1874 54.6
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1776.1 1882 54.8
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1776.1 1882 54.8
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1769.2 2027 55.0
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1768.1 1921 54.0
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1765.4 1899 54.3
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1758.4 1716 58.9
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1744.2 1909 53.5
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1736.5 1888 53.9
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1645.2 2009 52.8
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1595.1 1962 51.0
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1528.1 1242 67.6
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1523.8 1850 49.8
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1466.8 1234 67.1
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1444.1 1887 48.3
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1444.1 1887 48.3
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1439.9 1940 47.7
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1437.2 1942 49.2
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1426.8 1496 57.1
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1416.0 1854 48.5
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1394.8 1361 58.3
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1375.9 1985 47.5
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1329.3 1236 62.5
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1253.8 1556 50.5
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1202.2 1802 44.8
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1190.6 1095 64.9
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1146.7 924 68.5
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1095.1 1327 53.0
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.6e-307 1059.3 1044 61.1
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 1.6e-278 964.1 865 63.0
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 5.4e-271 939.1 844 65.3
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 2.1e-270 937.2 1453 46.2
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.3e-269 933.7 1833 37.9
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.3e-252 876.3 1844 36.1
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.8e-251 873.6 808 61.3
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 1.3e-237 828.2 895 53.3
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.8e-195 686.8 621 65.2
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 3.6e-182 644.0 721 53.8
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.3e-175 620.9 673 52.3
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.0e-173 614.0 651 53.0
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 2.8e-166 591.3 499 62.5
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 2.4e-162 578.2 620 53.2
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.4e-156 557.4 457 68.9
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.6e-142 511.1 562 57.5
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.9e-139 500.7 551 57.4
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 4.3e-119 434.5 433 58.2
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 8.2e-118 430.3 460 54.6
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 3.8e-99 368.2 1235 27.4
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 5.2e-80 304.7 633 34.9
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 7.7e-76 290.8 852 32.0
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 6.1e-73 281.2 465 39.8
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.8e-72 279.6 480 40.4
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 6.3e-70 271.2 2071 22.2
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.5e-66 260.0 275 67.3
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.0e-59 237.3 222 61.3
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 8.6e-59 234.2 456 37.1
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.4e-53 216.1 185 65.4
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 1.4e-45 190.3 207 48.8
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 4.3e-42 178.7 191 71.2
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.1e-40 174.1 215 53.0
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 2.1e-25 123.2 181 48.1
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 2.4e-21 109.8 98 54.1
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 9.0e-16 91.3 82 59.8
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 9.9e-15 87.8 130 71.5
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.4e-13 84.0 164 37.2
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 6.0e-12 78.6 58 63.8
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 7.9e-12 78.2 55 67.3
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.1e-10 74.3 43 72.1
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 5.6e-10 72.0 51 58.8
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.3e-09 70.9 52 59.6
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 3.7e-09 69.3 44 77.3
EL10Ac7g17257 Beta vulgaris HOM05D002037 ORTHO05D021575 2.9e-06 59.7 43 69.8
Cfa014748 Carpinus fangiana HOM05D000549 ORTHO05D021575 6.5e-06 58.5 100 46.0
Hma1.2p1_0214F.1_g090630 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.5e-06 58.5 40 72.5


User provided reference genes

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