Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 2.0e-180 635.6 311 100.0
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.5e-154 549.7 336 82.1
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 5.6e-154 547.7 336 82.4
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 1.3e-142 510.0 318 80.5
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 4.3e-138 495.0 335 72.8
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.1e-136 488.8 340 71.8
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.0e-136 488.4 339 71.4
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.2e-135 486.9 336 71.7
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.0e-135 486.1 342 71.1
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.4e-135 485.3 339 71.1
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 9.9e-135 483.8 334 70.4
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 1.3e-134 483.4 335 70.4
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.7e-134 483.0 339 70.2
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 7.1e-133 477.6 346 68.2
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.1e-132 476.1 333 70.0
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 3.5e-132 475.3 311 72.7
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.3e-131 473.4 337 68.5
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 2.3e-131 472.6 333 68.8
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 8.7e-131 470.7 331 69.2
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.7e-131 470.7 334 69.2
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.5e-130 469.2 308 73.4
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.3e-130 468.8 334 68.9
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 9.6e-130 467.2 337 66.5
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 4.8e-129 464.9 335 68.4
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 4.8e-129 464.9 336 67.0
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 6.2e-129 464.5 332 67.2
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.4e-128 463.4 330 68.8
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 5.3e-128 461.5 309 72.5
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 5.3e-128 461.5 340 66.5
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 6.9e-128 461.1 332 67.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 9.0e-128 460.7 335 67.5
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.2e-127 460.3 338 69.5
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.5e-127 459.9 336 67.0
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.0e-127 459.5 328 70.4
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 2.6e-127 459.1 341 66.6
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 3.4e-127 458.8 340 67.4
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 4.5e-127 458.4 323 68.4
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 5.8e-127 458.0 335 65.1
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 1.0e-126 457.2 329 67.5
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.7e-126 456.4 338 66.3
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 1.7e-126 456.4 331 68.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.2e-126 456.1 335 67.5
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 2.9e-126 455.7 331 68.0
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.9e-126 455.7 334 67.4
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.9e-126 455.7 334 67.1
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.9e-126 454.9 337 66.2
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 1.4e-125 453.4 336 67.0
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 1.9e-125 453.0 334 67.1
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.5e-125 452.6 333 66.4
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 2.5e-125 452.6 339 66.4
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 3.2e-125 452.2 337 66.2
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 4.2e-125 451.8 343 64.7
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 5.5e-125 451.4 339 65.2
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 7.1e-125 451.1 338 63.3
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 7.1e-125 451.1 330 67.3
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.2e-124 450.3 338 65.7
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 2.1e-124 449.5 349 63.6
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 4.6e-124 448.4 338 63.0
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.6e-124 448.4 334 66.5
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 6.0e-124 448.0 317 68.1
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 7.9e-124 447.6 339 63.1
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 7.9e-124 447.6 339 63.1
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.9e-124 447.6 334 66.5
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 7.9e-124 447.6 328 67.1
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 1.0e-123 447.2 339 63.1
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.0e-123 447.2 339 63.1
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 1.0e-123 447.2 339 63.1
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.3e-123 446.8 336 66.1
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 8.7e-123 444.1 338 65.1
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.5e-122 443.4 338 63.0
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 5.6e-122 441.4 339 66.7
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.4e-122 441.0 336 65.2
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 9.6e-122 440.7 336 65.2
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.3e-121 440.3 338 63.6
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 2.8e-121 439.1 338 62.1
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.8e-121 439.1 328 66.5
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 3.7e-121 438.7 339 63.1
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 6.2e-121 438.0 339 62.5
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 6.2e-121 438.0 337 62.6
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 8.2e-121 437.6 338 61.5
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.1e-120 437.2 337 62.6
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.1e-120 437.2 324 65.7
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.4e-120 436.0 313 66.8
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 2.4e-120 436.0 308 67.2
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 2.4e-120 436.0 308 67.2
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 5.3e-120 434.9 375 60.3
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 5.3e-120 434.9 339 64.0
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.9e-120 434.5 313 66.8
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 7.6e-119 431.0 332 63.0
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.0e-118 430.6 335 65.1
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.3e-118 430.3 338 64.2
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.7e-118 429.9 310 65.2
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.9e-118 429.1 323 65.3
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 8.4e-118 427.6 309 65.4
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 2.1e-116 422.9 309 65.4
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.5e-116 422.2 339 65.2
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.1e-116 421.4 331 61.0
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 6.7e-115 417.9 329 63.5
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.5e-114 416.8 296 69.6
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 4.3e-114 415.2 307 63.8
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 3.7e-113 412.1 336 61.0
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 6.3e-113 411.4 296 68.2
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.2e-111 407.1 288 67.4
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.0e-111 406.4 335 62.4
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.5e-111 405.2 307 61.6
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 7.7e-111 404.4 355 60.6
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.7e-110 403.3 341 59.8
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.7e-110 403.3 333 60.1
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.8e-110 402.1 317 65.0
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.7e-107 391.3 306 63.7
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.1e-106 390.6 359 55.7
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.3e-105 384.8 303 61.4
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 4.1e-104 382.1 267 71.5
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.5e-103 378.6 283 65.7
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 3.2e-101 372.5 335 57.6
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 7.2e-101 371.3 263 70.7
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 1.6e-100 370.2 308 58.1
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 4.7e-100 368.6 305 57.4
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.0e-99 367.5 291 61.5
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.9e-99 365.5 291 62.9
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 5.3e-96 355.1 312 55.4
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.5e-95 352.4 378 52.1
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 6.5e-94 348.2 287 62.0
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.1e-93 347.4 306 55.2
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.1e-92 343.2 245 69.8
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 7.7e-79 298.1 302 52.3
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.0e-78 297.7 244 60.2
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.0e-75 287.7 251 55.8
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.0e-75 285.8 227 58.6
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.2e-74 284.3 266 54.9
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 4.1e-72 275.8 222 60.8
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 2.0e-71 273.5 170 78.2
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.5e-69 267.3 301 45.5
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 7.5e-66 255.0 229 54.6
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.1e-60 236.9 251 51.8
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 4.4e-58 229.2 130 83.8
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 7.0e-56 221.9 141 75.2
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 1.6e-52 210.7 146 67.8
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.1e-48 198.0 112 78.6
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.4e-48 197.6 154 61.0
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 3.4e-34 149.8 103 68.0
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 5.4e-24 115.9 75 64.0
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 1.2e-23 114.8 76 73.7
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 2.1e-23 114.0 64 78.1
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.1e-21 108.2 64 73.4
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 6.9e-19 99.0 162 42.0
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 9.0e-19 98.6 72 61.1
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 1.7e-17 94.4 72 63.9
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.1e-16 89.0 55 76.4
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 3.0e-14 83.6 75 57.3
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.9e-09 66.2 40 72.5
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 8.4e-09 65.5 216 26.4
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.1e-08 65.1 94 38.3
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 1.9e-08 64.3 76 48.7
CBR_g19347 Chara braunii HOM05D002024 ORTHO05D004352 1.8e-06 57.8 150 28.0
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 1.8e-06 57.8 242 27.3
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.8e-06 57.8 143 28.7
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 3.9e-06 56.6 135 29.6
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 5.1e-06 56.2 135 29.6
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 5.1e-06 56.2 135 29.6
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 6.7e-06 55.8 135 31.1
Lsat_1_v5_gn_2_103580 Lactuca sativa HOM05D002024 ORTHO05D004352 8.7e-06 55.5 138 28.3
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 8.7e-06 55.5 142 30.3


User provided reference genes

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