Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015138 Sechium edule HOM05D001341 ORTHO05D001181 4.4e-30 134.0 71 100.0
Sed0018049 Sechium edule HOM05D001341 ORTHO05D001181 1.0e-10 69.7 47 87.2
Sed0020028 Sechium edule HOM05D001341 ORTHO05D001181 1.5e-09 65.9 45 71.1
ClCG04G009880 Citrullus lanatus HOM05D001341 ORTHO05D001181 1.6e-08 62.4 50 64.0
CsaV3_6G040530 Cucumis sativus L. HOM05D001341 ORTHO05D001181 1.6e-08 62.4 42 71.4
DCAR_013374 Daucus carota HOM05D001341 ORTHO05D001181 1.6e-08 62.4 52 63.5
Sabra10G0183500 Salix brachista HOM05D001341 ORTHO05D001181 6.2e-08 60.5 53 54.7
vmacro04485 Vaccinium macrocarpon HOM05D001341 ORTHO05D001181 6.2e-08 60.5 45 60.0
Oeu008111.1 Olea europaea HOM05D001341 ORTHO05D001181 8.1e-08 60.1 49 57.1
Thecc.05G085000 Theobroma cacao HOM05D001341 ORTHO05D001181 8.1e-08 60.1 45 62.2
Aqoxy4G02836 Aquilegia oxysepala HOM05D001341 ORTHO05D001181 1.8e-07 58.9 38 73.7
Duzib150G0915 Durio zibethinus HOM05D001341 ORTHO05D001181 2.4e-07 58.5 42 61.9
Duzib093G1815 Durio zibethinus HOM05D001341 ORTHO05D001181 3.1e-07 58.2 44 61.4
CiPaw.14G102300 Carya illinoinensis HOM05D001341 ORTHO05D001181 5.2e-07 57.4 43 60.5
Duzib114G0377 Durio zibethinus HOM05D001341 ORTHO05D001181 5.2e-07 57.4 49 61.2
Gorai.002G241200 Gossypium raimondii HOM05D001341 ORTHO05D001181 5.2e-07 57.4 43 62.8
Potri.009G146200 Populus trichocarpa HOM05D001341 ORTHO05D001181 5.2e-07 57.4 46 58.7
CANSAT35G1609 Cannabis sativa HOM05D001341 ORTHO05D001181 6.8e-07 57.0 51 60.8
Duzib168G1326 Durio zibethinus HOM05D001341 ORTHO05D001181 6.8e-07 57.0 42 61.9
RcHm_v2.0_Chr5g0001741 Rosa chinensis HOM05D001341 ORTHO05D001181 6.8e-07 57.0 42 64.3
Sc20g0006140 Simmondsia chinensis HOM05D001341 ORTHO05D001181 6.8e-07 57.0 48 58.3
Ciclev10029621m.g Citrus clementina HOM05D001341 ORTHO05D001181 8.9e-07 56.6 44 59.1
MELO3C021436.2 Cucumis melo HOM05D001341 ORTHO05D001181 8.9e-07 56.6 42 59.5
Peaxi162Scf00401g00037 Petunia axillaris HOM05D001341 ORTHO05D001181 8.9e-07 56.6 38 68.4
Ciclev10013051m.g Citrus clementina HOM05D001341 ORTHO05D001181 1.2e-06 56.2 43 62.8
Duzib106G1188 Durio zibethinus HOM05D001341 ORTHO05D001181 1.2e-06 56.2 39 66.7
Prupe.7G114700 Prunus persica HOM05D001341 ORTHO05D001181 1.2e-06 56.2 50 56.0
SGA_v2.0_scaffold102G29925 Striga asiatica HOM05D001341 ORTHO05D001181 1.2e-06 56.2 38 68.4
SGA_v2.0_scaffold17G07905 Striga asiatica HOM05D001341 ORTHO05D001181 1.2e-06 56.2 38 68.4
SGA_v2.0_scaffold83G26403 Striga asiatica HOM05D001341 ORTHO05D001181 1.2e-06 56.2 38 68.4
HPP92_021399 Vanilla planifolia HOM05D001341 ORTHO05D001181 1.2e-06 56.2 51 58.8
CSS0045416 Camellia sinensis var. sinensis HOM05D001341 ORTHO05D001181 1.5e-06 55.8 44 56.8
FAN25G2073 Fragaria x ananassa HOM05D001341 ORTHO05D001181 1.5e-06 55.8 48 58.3
PSO339G4793 Papaver somniferum HOM05D001341 ORTHO05D001181 1.5e-06 55.8 44 59.1
PSO384G0495 Papaver somniferum HOM05D001341 ORTHO05D001181 1.5e-06 55.8 44 59.1
Ah.15g091030 Amaranthus hybridus HOM05D001341 ORTHO05D001181 2.0e-06 55.5 46 52.2
Ca_01668_v3 Cicer arietinum L. HOM05D001341 ORTHO05D001181 2.0e-06 55.5 38 65.8
Nn3g20663 Nelumbo nucifera HOM05D001341 ORTHO05D001181 2.0e-06 55.5 45 55.6
RcHm_v2.0_Chr5g0043421 Rosa chinensis HOM05D001341 ORTHO05D001181 2.0e-06 55.5 42 61.9
Sc07g0005440 Simmondsia chinensis HOM05D001341 ORTHO05D001181 2.0e-06 55.5 45 55.6
Solyc11g067100.2 Solanum lycopersicum HOM05D001341 ORTHO05D001181 2.0e-06 55.5 38 65.8
Sopen11g026810 Solanum pennellii HOM05D001341 ORTHO05D001181 2.0e-06 55.5 38 65.8
GSVIVG01033814001 Vitis vinifera HOM05D001341 ORTHO05D001181 2.0e-06 55.5 41 61.0
Ca_05134_v3 Cicer arietinum L. HOM05D001341 ORTHO05D001181 2.6e-06 55.1 38 65.8
Gohir.A01G207700 Gossypium hirsutum HOM05D001341 ORTHO05D001181 2.6e-06 55.1 38 65.8
Oeu058266.1 Olea europaea HOM05D001341 ORTHO05D001181 2.6e-06 55.1 38 65.8
Oeu058274.1 Olea europaea HOM05D001341 ORTHO05D001181 2.6e-06 55.1 38 65.8
QL07p039803 Quercus lobata HOM05D001341 ORTHO05D001181 2.6e-06 55.1 42 59.5
Sabra04G0125100 Salix brachista HOM05D001341 ORTHO05D001181 2.6e-06 55.1 44 56.8
SGA_v2.0_scaffold35G14074 Striga asiatica HOM05D001341 ORTHO05D001181 2.6e-06 55.1 38 65.8
TAR623G0961 Trochodendron aralioides HOM05D001341 ORTHO05D001181 2.6e-06 55.1 38 65.8
Actinidia31279 Actinidia chinensis HOM05D001341 ORTHO05D001181 3.4e-06 54.7 38 60.5
EL10Ac7g16955 Beta vulgaris HOM05D001341 ORTHO05D001181 3.4e-06 54.7 38 63.2
Dinv42576 Davidia involucrata HOM05D001341 ORTHO05D001181 3.4e-06 54.7 48 54.2
Gohir.D09G136600 Gossypium hirsutum HOM05D001341 ORTHO05D001181 3.4e-06 54.7 41 61.0
Gorai.006G156700 Gossypium raimondii HOM05D001341 ORTHO05D001181 3.4e-06 54.7 41 61.0
Medtr0227s0020 Medicago truncatula HOM05D001341 ORTHO05D001181 3.4e-06 54.7 38 65.8
Medtr2g085085 Medicago truncatula HOM05D001341 ORTHO05D001181 3.4e-06 54.7 48 60.4
Psat5g256040 Pisum sativum HOM05D001341 ORTHO05D001181 3.4e-06 54.7 38 65.8
Sabra09G0113100 Salix brachista HOM05D001341 ORTHO05D001181 3.4e-06 54.7 43 58.1
Sabra09G0115500 Salix brachista HOM05D001341 ORTHO05D001181 3.4e-06 54.7 43 58.1
Thecc.09G288100 Theobroma cacao HOM05D001341 ORTHO05D001181 3.4e-06 54.7 46 56.5
Atru.chr3.3337 Acer truncatum HOM05D001341 ORTHO05D001181 4.4e-06 54.3 38 63.2
CANSAT35G1035 Cannabis sativa HOM05D001341 ORTHO05D001181 4.4e-06 54.3 38 65.8
CAN.G186.25 Capsicum annuum HOM05D003138 ORTHO05D003789 4.4e-06 54.3 42 59.5
CDE02G3775 Ceratophyllum demersum HOM05D001341 ORTHO05D001181 4.4e-06 54.3 47 59.6
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 4.4e-06 54.3 38 63.2
Eucgr.J00465 Eucalyptus grandis HOM05D001341 ORTHO05D001181 4.4e-06 54.3 38 60.5
Lalb_Chr06g0173291 Lupinus albus HOM05D001341 ORTHO05D001181 4.4e-06 54.3 38 63.2
QL04p042882 Quercus lobata HOM05D001341 ORTHO05D001181 4.4e-06 54.3 38 63.2
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 4.4e-06 54.3 38 63.2
Sc12g0004310 Simmondsia chinensis HOM05D001341 ORTHO05D001181 4.4e-06 54.3 38 63.2
PGSC0003DMG400007410 Solanum tuberosum HOM05D001341 ORTHO05D001181 4.4e-06 54.3 38 63.2
PGSC0003DMG400011194 Solanum tuberosum HOM05D001341 ORTHO05D001181 4.4e-06 54.3 38 65.8
SGA_v2.0_scaffold184G39952 Striga asiatica HOM05D001272 ORTHO05D001843 4.4e-06 54.3 42 57.1
TPR.G23792 Trifolium pratense HOM05D001341 ORTHO05D001181 4.4e-06 54.3 45 60.0
unitig_747.g21950 Utricularia gibba HOM05D001341 ORTHO05D001181 4.4e-06 54.3 38 63.2
Atru.chr13.1903 Acer truncatum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 60.5
Atru.chr8.1597 Acer truncatum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 45 57.8
Aqoxy6G02610 Aquilegia oxysepala HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
AT2G27710 Arabidopsis thaliana HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
AT2G27720 Arabidopsis thaliana HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
CANSAT11G0891 Cannabis sativa HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
Carub.0004s0846 Capsella rubella HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
Carub.0004s0848 Capsella rubella HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
CAN.G353.3 Capsicum annuum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 45 51.1
Cpa.g.sc31.11 Carica papaya HOM05D001341 ORTHO05D001181 5.8e-06 53.9 37 67.6
Cpa.g.sc31.7 Carica papaya HOM05D001341 ORTHO05D001181 5.8e-06 53.9 37 67.6
Cpa.g.sc31.88 Carica papaya HOM05D001341 ORTHO05D001181 5.8e-06 53.9 37 67.6
Cfa010059 Carpinus fangiana HOM05D001341 ORTHO05D001181 5.8e-06 53.9 37 64.9
CiPaw.13G038000 Carya illinoinensis HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
CDE09G0537 Ceratophyllum demersum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 42 57.1
COL.COLO4_06998 Corchorus olitorius HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
COL.COLO4_19938 Corchorus olitorius HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Duzib170G0664 Durio zibethinus HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Thhalv10017442m.g Eutrema salsugineum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
Gohir.A08G004200 Gossypium hirsutum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Gohir.A08G004300 Gossypium hirsutum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Gohir.D01G197100 Gossypium hirsutum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
Gohir.D05G085500 Gossypium hirsutum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Gohir.D08G014500 Gossypium hirsutum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Gohir.D08G014600 Gossypium hirsutum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Gorai.004G008900 Gossypium raimondii HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Gorai.004G009000 Gossypium raimondii HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Gorai.009G087300 Gossypium raimondii HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Hma1.2p1_0084F.1_g043430 Hydrangea macrophylla HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
Hma1.2p1_0305F.1_g119450 Hydrangea macrophylla HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
Lsat_1_v5_gn_6_39761 Lactuca sativa HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Lj2g0006876 Lotus japonicus HOM05D001341 ORTHO05D001181 5.8e-06 53.9 48 58.3
Nn2g14069 Nelumbo nucifera HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
Nn6g34997 Nelumbo nucifera HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 63.2
PGR119G1143 Punica granatum HOM05D001341 ORTHO05D001181 5.8e-06 53.9 41 56.1
Sp4g10490 Schrenkiella parvula HOM05D001341 ORTHO05D001181 5.8e-06 53.9 38 65.8
GSVIVG01034757001 Vitis vinifera HOM05D001341 ORTHO05D001181 5.8e-06 53.9 43 58.1
MELO3C024528.2 Cucumis melo HOM05D001341 ORTHO05D001181 7.6e-06 53.5 43 58.1
Thhalv10023112m.g Eutrema salsugineum HOM05D001341 ORTHO05D001181 7.6e-06 53.5 38 65.8
Thhalv10023766m.g Eutrema salsugineum HOM05D001341 ORTHO05D001181 7.6e-06 53.5 38 65.8
Lsat_1_v5_gn_1_62040 Lactuca sativa HOM05D001341 ORTHO05D001181 7.6e-06 53.5 38 63.2
MD11G1160300 Malus domestica HOM05D001341 ORTHO05D001181 7.6e-06 53.5 42 57.1
MD14G1180800 Malus domestica HOM05D001341 ORTHO05D001181 7.6e-06 53.5 42 57.1
Potri.004G185800 Populus trichocarpa HOM05D001341 ORTHO05D001181 7.6e-06 53.5 41 58.5
Sp4g10510 Schrenkiella parvula HOM05D001341 ORTHO05D001181 7.6e-06 53.5 38 65.8
TPR.G2695 Trifolium pratense HOM05D001341 ORTHO05D030157 7.6e-06 53.5 38 65.8
Atru.chr1.3311 Acer truncatum HOM05D001341 ORTHO05D001181 9.9e-06 53.1 43 60.5
CAN.G919.15 Capsicum annuum HOM05D001341 ORTHO05D001181 9.9e-06 53.1 38 63.2
Duzib128G1758 Durio zibethinus HOM05D001341 ORTHO05D001181 9.9e-06 53.1 38 63.2
ECA234G4259 Erigeron canadensis HOM05D003158 ORTHO05D003560 9.9e-06 53.1 48 52.1
Eucgr.A00378 Eucalyptus grandis HOM05D001341 ORTHO05D001181 9.9e-06 53.1 38 60.5
Gohir.A09G138000 Gossypium hirsutum HOM05D001341 ORTHO05D001181 9.9e-06 53.1 38 63.2
Nitab4.5_0002320g0040 Nicotiana tabacum HOM05D001341 ORTHO05D001181 9.9e-06 53.1 38 65.8
Os01g0191100 Oryza sativa ssp. japonica HOM05D001341 ORTHO05D001181 9.9e-06 53.1 38 60.5
Peaxi162Scf00544g01010 Petunia axillaris HOM05D001341 ORTHO05D001181 9.9e-06 53.1 49 53.1
QL01p013264 Quercus lobata HOM05D001341 ORTHO05D001181 9.9e-06 53.1 38 60.5
QL07p040372 Quercus lobata HOM05D001341 ORTHO05D001181 9.9e-06 53.1 38 60.5
RcHm_v2.0_Chr5g0002781 Rosa chinensis HOM05D001341 ORTHO05D001181 9.9e-06 53.1 46 56.5
SalBow6G6476 Salvia bowleyana HOM05D001341 ORTHO05D001181 9.9e-06 53.1 42 57.1
SEGI_29307 Sequoiadendron giganteum HOM05D001341 ORTHO05D001181 9.9e-06 53.1 45 55.6
SEGI_35886 Sequoiadendron giganteum HOM05D001341 ORTHO05D001181 9.9e-06 53.1 43 58.1
PGSC0003DMG400007119 Solanum tuberosum HOM05D001341 ORTHO05D001181 9.9e-06 53.1 38 60.5
Thecc.09G288200 Theobroma cacao HOM05D001341 ORTHO05D001181 9.9e-06 53.1 38 60.5


User provided reference genes

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